SMTL ID : 4kt0.1

Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x PQN: PHYLLOQUINONE(Non-covalent)

PQN.1: 16 residues within 4Å: Chain A: M.684, F.685, S.688, G.689, R.690, W.693, A.717, L.718, G.723 Chain G: I.15, L.19 Ligands: CLA.14, CLA.41, BCR.66, CLA.68, CLA.115 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain G Hydrophobic interactions: A:F.685, A:F.685, A:R.690, A:W.693, A:L.718, G:I.15, G:L.19 Hydrogen bonds: A:S.688, A:L.718 pi-Stacking: A:W.693 PQN.57: 15 residues within 4Å: Chain B: W.22, M.659, F.660, S.663, W.664, R.665, W.668, A.696, L.697, A.702 Ligands: CLA.49, LMG.58, BCR.67, CLA.107, CLA.108 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.22, B:F.660, B:F.660, B:R.665, B:W.668, B:W.668, B:L.697, B:A.702 Hydrogen bonds: B:L.697 pi-Stacking: B:W.668

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 10 residues within 4Å: Chain A: C.574, G.576, P.577, C.583, I.720 Chain B: C.556, P.559, C.565, W.664, I.699 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, Metal complexes: A:C.574, A:C.583, B:C.556, B:C.565 SF4.110: 10 residues within 4Å: Chain C: C.21, P.22, V.25, C.48, V.49, G.50, C.51, K.52, C.54, V.67 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.21, C:C.48, C:C.51, C:C.54 SF4.111: 11 residues within 4Å: Chain C: C.11, I.12, G.13, C.14, T.15, Q.16, C.17, A.40, C.58, P.59, S.64 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.11, C:C.14, C:C.17, C:C.58

4 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.3: 21 residues within 4Å: Chain A: W.49, N.50, H.52, A.53, N.54, F.399, R.571, W.588, L.595, S.719, I.721, Q.722, A.725, A.729, L.733 Chain E: G.51 Ligands: CLA.14, CLA.15, CLA.17, CLA.37, CLA.41 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.49, A:W.49, A:H.52, A:F.399, A:L.595, A:Q.722, A:L.733 Hydrogen bonds: A:N.54, A:N.54, A:R.571, A:S.719 Salt bridges: A:R.571, A:R.571 LHG.5: 13 residues within 4Å: Chain A: H.328, K.329, G.330, P.331, F.332, T.333, H.337 Ligands: BCR.9, CLA.12, CLA.31, CLA.39, CLA.47, CLA.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.330, A:F.332, A:T.333 LHG.54: 6 residues within 4Å: Chain A: Q.468, D.469, I.476 Ligands: CLA.38, CLA.49, CLA.50 No protein-ligand interaction detected (PLIP) LHG.59: 19 residues within 4Å: Chain B: H.308, K.309, G.310, P.311, L.312, T.313, G.316, H.317, V.405 Ligands: CLA.55, BCR.63, BCR.64, CLA.86, CLA.88, CLA.89, CLA.93, CLA.94, CLA.99, CLA.101 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.310, B:G.310, B:L.312, B:T.313, B:H.317

2 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)

CL0.4: 28 residues within 4Å: Chain A: F.452, Y.455, I.537, F.540, T.541, Y.599, N.600, S.603, I.604, F.607, I.642, W.645, L.650, A.654, I.658, F.672, H.676, F.679, Y.731, T.738, T.739, F.742 Chain B: F.617, L.621, W.622 Ligands: CLA.13, CLA.42, CLA.69 27 PLIP interactions: 24 interactions with chain A, 3 interactions with chain B, Hydrophobic interactions: A:F.452, A:Y.455, A:I.537, A:I.537, A:F.540, A:T.541, A:F.607, A:I.642, A:I.642, A:W.645, A:W.645, A:L.650, A:L.650, A:A.654, A:I.658, A:F.672, A:F.672, A:F.679, A:F.679, A:T.738, A:F.742, B:F.617, B:L.621 Hydrogen bonds: A:Y.731 pi-Stacking: A:F.672, B:F.617 Metal complexes: A:H.676 CL0.21: 13 residues within 4Å: Chain A: V.14, V.16, F.73, F.77, L.171, M.172, A.175, F.178, H.179, K.183, W.189 Ligands: CLA.23, CLA.24 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:V.14, A:F.73, A:F.77, A:A.175, A:F.178, A:W.189 Salt bridges: A:K.183, A:K.183 Metal complexes: A:H.179

17 x BCR: BETA-CAROTENE(Non-covalent)

BCR.6: 13 residues within 4Å: Chain A: L.210, F.263, L.298, I.305, H.309 Chain H: V.73, A.106, S.109, F.110 Ligands: BCR.7, CLA.26, CLA.29, CLA.45 Ligand excluded by PLIP BCR.7: 14 residues within 4Å: Chain A: F.84, L.87, T.161, G.164, G.165, M.168, L.207 Ligands: BCR.6, BCR.8, CLA.16, CLA.25, CLA.29, CLA.43, CLA.122 Ligand excluded by PLIP BCR.8: 10 residues within 4Å: Chain A: G.203, L.207, G.208 Ligands: BCR.7, CLA.16, CLA.17, CLA.23, CLA.24, CLA.28, CLA.36 Ligand excluded by PLIP BCR.9: 9 residues within 4Å: Chain A: A.350, I.354, F.411 Ligands: LHG.5, BCR.10, CLA.12, CLA.30, CLA.31, CLA.32 Ligand excluded by PLIP BCR.10: 12 residues within 4Å: Chain A: A.357, S.361, I.401, A.404, G.405, L.549 Ligands: BCR.9, CLA.30, CLA.33, CLA.34, CLA.39, CLA.51 Ligand excluded by PLIP BCR.11: 13 residues within 4Å: Chain A: W.86 Chain G: A.23, L.26, N.30 Ligands: CLA.18, CLA.19, CLA.20, CLA.35, CLA.41, CLA.42, BCR.65, CLA.96, BCR.119 Ligand excluded by PLIP BCR.60: 10 residues within 4Å: Chain B: L.188, F.225, F.226, V.282, I.285, H.289, I.297 Ligands: CLA.78, CLA.83, CLA.84 Ligand excluded by PLIP BCR.61: 9 residues within 4Å: Chain B: I.57, F.58, F.149, G.181, S.186 Ligands: CLA.72, CLA.76, CLA.77, CLA.91 Ligand excluded by PLIP BCR.62: 9 residues within 4Å: Chain B: L.65, M.129, G.138, F.141, L.142, L.145 Ligands: CLA.78, CLA.91, CLA.105 Ligand excluded by PLIP BCR.63: 9 residues within 4Å: Chain B: F.385, M.409, I.532 Ligands: LHG.59, BCR.64, CLA.86, CLA.87, CLA.89, CLA.93 Ligand excluded by PLIP BCR.64: 17 residues within 4Å: Chain B: F.330, L.334, A.337, M.381, A.384, F.385, G.388, F.391, F.392 Ligands: LHG.59, BCR.63, CLA.82, CLA.88, CLA.89, CLA.97, CLA.98, CLA.101 Ligand excluded by PLIP BCR.65: 17 residues within 4Å: Chain A: A.674, F.677, V.678, I.736, V.737, W.740 Chain B: L.432 Ligands: BCR.11, CLA.14, CLA.19, CLA.35, CLA.37, CLA.41, CLA.42, CLA.68, CLA.95, CLA.96 Ligand excluded by PLIP BCR.66: 18 residues within 4Å: Chain B: L.425, F.429 Chain F: P.90, L.93, F.94, I.97, I.101 Chain G: L.26 Ligands: PQN.1, CLA.14, CLA.40, CLA.41, CLA.68, CLA.95, CLA.96, BCR.113, CLA.115, CLA.116 Ligand excluded by PLIP BCR.67: 14 residues within 4Å: Chain B: V.642, W.645, F.649, W.668, I.675 Ligands: CLA.13, CLA.49, PQN.57, CLA.70, CLA.73, CLA.92, CLA.104, CLA.106, CLA.108 Ligand excluded by PLIP BCR.113: 19 residues within 4Å: Chain B: F.426, H.430, L.434, I.453, H.518 Chain F: L.75, F.87, P.90 Chain G: Y.33, L.36, L.37, F.38, H.39, P.40 Ligands: BCR.66, CLA.95, CLA.96, CLA.100, CLA.117 Ligand excluded by PLIP BCR.114: 14 residues within 4Å: Chain A: L.707 Chain B: F.457 Chain F: V.77, G.99, G.102, W.103, W.140, A.144 Ligands: CLA.40, CLA.94, CLA.95, CLA.99, CLA.100, CLA.112 Ligand excluded by PLIP BCR.119: 17 residues within 4Å: Chain A: W.118, I.120 Chain G: P.12, V.13, M.16, T.20, I.27, E.28, R.31 Ligands: BCR.11, CLA.14, CLA.15, CLA.18, CLA.19, CLA.20, CLA.41, CLA.120 Ligand excluded by PLIP

90 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.12: 9 residues within 4Å: Chain A: A.327, H.328, K.329, P.331, F.332 Ligands: LHG.5, BCR.9, CLA.31, CLA.46 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:P.331, A:F.332 CLA.13: 23 residues within 4Å: Chain A: F.452, I.456, D.459, F.540, F.596, W.597, N.600, I.642, L.646, Y.731 Chain B: W.645, L.648, F.649, H.651, L.652, W.654, A.655 Ligands: CL0.4, BCR.67, CLA.69, CLA.70, CLA.74, CLA.104 18 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.452, A:F.452, A:I.456, A:D.459, A:F.540, A:F.540, A:W.597, A:W.597, A:I.642, A:Y.731, B:W.645, B:L.648, B:H.651, B:L.652, B:L.652, B:W.654, B:A.655 Metal complexes: H2O.1 CLA.14: 26 residues within 4Å: Chain A: W.28, P.31, W.47, I.48, W.49, L.51, H.52 Chain F: V.123 Chain G: F.7, A.11, P.12, I.15, L.19 Ligands: PQN.1, LHG.3, CLA.15, CLA.22, CLA.35, CLA.40, CLA.41, CLA.42, BCR.65, BCR.66, CLA.115, CLA.116, BCR.119 9 PLIP interactions: 5 interactions with chain A, 1 interactions with chain F, 3 interactions with chain G, Hydrophobic interactions: A:P.31, A:W.47, A:W.49, A:L.51, F:V.123, G:F.7, G:P.12, G:L.19 Metal complexes: A:H.52 CLA.15: 21 residues within 4Å: Chain A: W.28, H.33, F.34, L.51, A.55, H.56, F.58, Q.61, A.75, G.78, H.79 Ligands: LHG.3, CLA.14, CLA.16, CLA.17, CLA.18, CLA.19, CLA.20, CLA.22, CLA.37, BCR.119 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:F.34, A:L.51, A:A.55 Salt bridges: A:H.33, A:K.71 CLA.16: 25 residues within 4Å: Chain A: H.56, F.58, I.72, A.75, H.76, H.79, L.80, V.83, F.84, L.87, W.348, H.349, Q.351, L.352, N.355, L.356, L.359 Ligands: BCR.7, BCR.8, CLA.15, CLA.17, CLA.24, CLA.25, CLA.32, CLA.37 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.58, A:F.58, A:I.72, A:I.72, A:H.79, A:L.80, A:V.83, A:F.84, A:L.87, A:W.348, A:Q.351, A:L.352, A:L.352, A:L.352 Hydrogen bonds: A:N.355 Salt bridges: A:H.79 pi-Stacking: A:H.79 Metal complexes: A:H.76 CLA.17: 13 residues within 4Å: Chain A: H.56, H.79, V.83, W.86, L.400 Ligands: LHG.3, BCR.8, CLA.15, CLA.16, CLA.19, CLA.35, CLA.36, CLA.37 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:V.83, A:V.83, A:W.86, A:W.86, A:L.400 Salt bridges: A:H.56 Metal complexes: A:H.79 CLA.18: 16 residues within 4Å: Chain A: V.85, W.86, S.88, G.89, M.90, F.92, H.93, F.97, V.116, W.118 Chain G: M.14 Ligands: BCR.11, CLA.15, CLA.19, CLA.20, BCR.119 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:F.92, A:F.92, A:F.92, A:F.97, A:F.97, A:W.118 Salt bridges: A:H.93 pi-Stacking: A:F.97 Metal complexes: A:H.93 CLA.19: 25 residues within 4Å: Chain A: W.86, M.90, A.114, Q.115, I.137, Q.138, I.139, T.140, S.141, L.143, A.667, Y.668, W.740 Ligands: BCR.11, CLA.15, CLA.17, CLA.18, CLA.20, CLA.22, CLA.35, CLA.37, CLA.41, CLA.42, BCR.65, BCR.119 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:I.137, A:A.667, A:Y.668, A:Y.668, A:W.740 Hydrogen bonds: A:T.140, A:S.141, A:S.141 CLA.20: 19 residues within 4Å: Chain A: Q.115, V.116, V.117, W.118, I.120, Q.123, L.126, I.137 Chain B: V.440, F.444 Chain G: I.27 Ligands: BCR.11, CLA.15, CLA.18, CLA.19, CLA.35, CLA.42, CLA.96, BCR.119 12 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: A:V.117, A:V.117, A:I.120, A:L.126, A:I.137, B:V.440, G:I.27, G:I.27 Hydrogen bonds: A:Q.115, A:W.118, A:Q.123 pi-Stacking: B:F.444 CLA.22: 19 residues within 4Å: Chain A: P.22, T.23, S.24, F.25, K.27, W.28, H.33, K.71, S.74, G.78, V.82, L.173, G.176, W.177, Y.180, H.181 Ligands: CLA.14, CLA.15, CLA.19 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:T.23, A:F.25, A:K.27, A:W.28, A:V.82, A:W.177 Hydrogen bonds: A:K.71, A:Y.180 Salt bridges: A:K.27, A:H.33, A:K.71 pi-Stacking: A:W.28, A:Y.180 CLA.23: 13 residues within 4Å: Chain A: K.13, V.14, W.189, N.192, S.195, H.199, T.313, N.314, W.315 Ligands: BCR.8, CL0.21, CLA.24, CLA.29 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:K.13, A:V.14, A:T.313, A:W.315 Hydrogen bonds: A:S.195 Metal complexes: A:H.199 CLA.24: 19 residues within 4Å: Chain A: F.73, H.76, F.77, L.80, M.168, M.172, W.189, F.190, N.192, M.196, H.199, H.200, G.203, L.204 Ligands: BCR.8, CLA.16, CL0.21, CLA.23, CLA.32 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.73, A:F.73, A:W.189, A:W.189, A:F.190, A:M.196, A:L.204, A:L.204 Salt bridges: A:H.76 Metal complexes: A:H.200 CLA.25: 16 residues within 4Å: Chain A: S.150, G.151, F.152, Q.157, C.160, T.161, G.211, W.212, H.215, V.219, P.239, H.240 Ligands: BCR.7, CLA.16, CLA.26, CLA.43 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:F.152, A:W.212, A:W.212, A:H.215, A:P.239 Metal complexes: A:H.215 CLA.26: 14 residues within 4Å: Chain A: L.210, G.211, G.214, I.217, H.218, I.243, P.246, F.256, Q.258, G.259, T.261, L.298 Ligands: BCR.6, CLA.25 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.210, A:I.217, A:I.243, A:F.256, A:F.256, A:L.298, A:L.298 CLA.27: 19 residues within 4Å: Chain A: T.276, F.277, G.279, L.288, D.292, T.293, H.295, H.296, A.299, I.300, L.303, H.369, M.373, A.505 Ligands: CLA.28, CLA.34, CLA.44, CLA.51, CLA.52 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.277, A:F.277, A:L.288, A:L.288, A:D.292, A:T.293, A:H.295, A:A.299, A:I.300, A:L.303 CLA.28: 24 residues within 4Å: Chain A: L.146, A.149, S.150, L.205, G.208, S.209, W.212, Q.216, T.293, H.296, H.297, I.300, F.304, L.362, I.365, V.366, M.370, P.375, Y.376 Ligands: BCR.8, CLA.27, CLA.30, CLA.34, CLA.36 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:L.205, A:W.212, A:T.293, A:I.300, A:F.304, A:F.304, A:L.362, A:I.365, A:V.366, A:P.375 pi-Stacking: A:W.212, A:H.296 Metal complexes: A:H.297 CLA.29: 17 residues within 4Å: Chain A: N.198, H.199, A.202, G.203, L.207, H.309, Y.311, T.313, W.315, I.317 Chain H: L.105, A.106, S.109 Ligands: BCR.6, BCR.7, CLA.23, CLA.122 10 PLIP interactions: 2 interactions with chain H, 8 interactions with chain A, Hydrophobic interactions: H:L.105, H:A.106, A:A.202, A:L.207, A:L.207, A:L.207, A:W.315, A:I.317 Hydrogen bonds: A:N.198 Metal complexes: A:H.309 CLA.30: 22 residues within 4Å: Chain A: M.197, L.201, L.205, L.303, F.304, A.307, M.310, Y.311, I.324, L.325, M.429, V.553 Ligands: BCR.9, BCR.10, CLA.28, CLA.31, CLA.32, CLA.33, CLA.34, CLA.45, CLA.46, CLA.47 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.201, A:L.205, A:F.304, A:F.304, A:A.307, A:V.553 Hydrogen bonds: A:Y.311 CLA.31: 15 residues within 4Å: Chain A: I.324, L.325, H.337, L.340, L.425, L.426, M.429 Ligands: LHG.5, BCR.9, CLA.12, CLA.30, CLA.32, CLA.39, CLA.46, CLA.47 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:L.340, A:L.426 Salt bridges: A:H.328, A:H.337 Metal complexes: A:H.337 CLA.32: 27 residues within 4Å: Chain A: S.69, H.76, L.187, F.190, V.193, M.196, M.197, H.200, L.204, M.321, L.325, L.344, T.345, T.346, S.347, W.348, Q.351, I.354, N.355, L.358, L.359 Ligands: BCR.9, CLA.16, CLA.24, CLA.30, CLA.31, CLA.36 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.187, A:V.193, A:L.204, A:L.325, A:L.344, A:L.344, A:W.348, A:W.348, A:I.354, A:N.355, A:L.358, A:L.358 Hydrogen bonds: A:H.200, A:N.355 Salt bridges: A:H.200 CLA.33: 16 residues within 4Å: Chain A: S.361, I.364, I.365, Q.368, M.394, I.401, I.542, T.545, S.601 Ligands: BCR.10, CLA.30, CLA.34, CLA.38, CLA.39, CLA.51, CLA.53 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:I.364, A:I.364, A:I.401, A:I.542, A:T.545 Hydrogen bonds: A:Q.368 CLA.34: 17 residues within 4Å: Chain A: L.358, L.362, I.365, Q.368, H.369, A.372, M.373, S.506, F.509 Ligands: BCR.10, CLA.27, CLA.28, CLA.30, CLA.33, CLA.39, CLA.51, CLA.53 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:L.358, A:L.362, A:F.509, A:F.509, A:F.509 Metal complexes: A:H.369 CLA.35: 21 residues within 4Å: Chain A: W.86, M.90, T.140, S.141, S.388, T.391, H.392, W.395, F.399, M.671, I.736, W.740 Ligands: BCR.11, CLA.14, CLA.17, CLA.19, CLA.20, CLA.36, CLA.37, BCR.65, CLA.96 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:W.395, A:F.399, A:I.736, A:I.736, A:W.740, A:W.740 pi-Stacking: A:W.740 CLA.36: 20 residues within 4Å: Chain A: W.86, L.87, S.141, G.142, L.146, L.205, L.362, T.363, V.366, M.370, Y.376, L.389, H.392, H.393, I.396 Ligands: BCR.8, CLA.17, CLA.28, CLA.32, CLA.35 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:W.86, A:L.205, A:L.362, A:T.363, A:V.366, A:I.396, A:I.396 pi-Stacking: A:H.392 Metal complexes: A:H.393 CLA.37: 27 residues within 4Å: Chain A: H.52, A.53, A.55, H.56, D.57, H.349, L.352, L.356, F.399, L.400, V.402, G.403, A.406, H.407, I.410, R.414, F.570, R.571, W.588 Ligands: LHG.3, CLA.15, CLA.16, CLA.17, CLA.19, CLA.35, CLA.41, BCR.65 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:H.56, A:L.352, A:L.356, A:L.400, A:V.402, A:A.406 Hydrogen bonds: A:A.55, A:H.56, A:D.57, A:R.571 Salt bridges: A:R.414, A:R.571 Metal complexes: A:H.407 CLA.38: 17 residues within 4Å: Chain A: F.446, L.447, Q.479, P.480, I.481, F.482, A.483, F.532, H.535, H.536, A.539, H.543 Ligands: CLA.33, CLA.39, CLA.49, CLA.53, LHG.54 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:F.446, A:F.446, A:L.447, A:F.482, A:F.482, A:F.532 Hydrogen bonds: A:F.482, A:A.483 Salt bridges: A:H.535 pi-Stacking: A:F.532 CLA.39: 16 residues within 4Å: Chain A: I.436, L.440, W.442, V.443, A.539, I.542, H.543 Ligands: LHG.5, BCR.10, CLA.31, CLA.33, CLA.34, CLA.38, CLA.47, CLA.48, CLA.53 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:I.436, A:L.440, A:L.440, A:W.442, A:V.443, A:I.542 Salt bridges: A:H.543 CLA.40: 23 residues within 4Å: Chain A: I.700, A.703, H.704, L.707, V.709 Chain B: S.418, H.419, S.421, W.422, L.425, F.429 Chain F: G.102, V.104, G.105, Y.108, M.134 Ligands: CLA.14, BCR.66, CLA.94, CLA.95, BCR.114, CLA.115, CLA.116 9 PLIP interactions: 2 interactions with chain F, 6 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: F:V.104, F:Y.108, A:I.700, A:I.700, A:L.707, A:V.709, B:F.429 Salt bridges: A:H.704 Metal complexes: A:H.704 CLA.41: 25 residues within 4Å: Chain A: W.49, F.677, F.681, L.718, Q.722, A.725, V.726, A.729, H.730, L.733 Chain G: L.19, T.20, T.22, A.23 Ligands: PQN.1, LHG.3, BCR.11, CLA.14, CLA.19, CLA.37, BCR.65, BCR.66, CLA.68, CLA.116, BCR.119 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain G, Hydrophobic interactions: A:W.49, A:F.677, A:F.681, A:F.681, A:L.718, A:V.726, A:L.733, G:T.22, G:A.23 Hydrogen bonds: A:Q.722 Metal complexes: A:H.730 CLA.42: 26 residues within 4Å: Chain A: I.670, L.673, A.674, H.676, F.677, F.679, A.680 Chain B: V.436, L.522, F.578, W.579, N.582, W.586, L.613, F.617, W.654, F.710 Ligands: CL0.4, BCR.11, CLA.14, CLA.19, CLA.20, BCR.65, CLA.68, CLA.69, CLA.96 23 PLIP interactions: 10 interactions with chain A, 12 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: A:I.670, A:L.673, A:A.674, A:H.676, A:F.677, A:F.677, A:F.677, A:F.679, A:A.680, B:V.436, B:V.436, B:L.522, B:W.579, B:W.579, B:W.579, B:N.582, B:W.586, B:L.613, B:W.654, B:F.710 Salt bridges: A:H.676 pi-Stacking: B:W.586 Metal complexes: H2O.1 CLA.43: 6 residues within 4Å: Chain A: Y.156, C.160, L.238, H.240 Ligands: BCR.7, CLA.25 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:Y.156, A:H.240 Salt bridges: A:H.240 pi-Stacking: A:H.240 CLA.44: 15 residues within 4Å: Chain A: F.263, W.268, Y.271, L.275, F.277, H.295, L.298, A.299, V.302, L.303, N.500 Chain H: L.120 Ligands: CLA.27, CLA.52, CLA.121 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:W.268, A:W.268, A:W.268, A:W.268, A:Y.271, A:Y.271, A:L.275, A:L.298, A:L.298, A:L.298, A:A.299, A:V.302, A:V.302, A:L.303 Salt bridges: A:H.295 pi-Stacking: A:W.268 CLA.45: 13 residues within 4Å: Chain A: I.306, H.309, M.310, R.312, I.317, G.318, H.319 Chain H: F.72, Y.76, A.78 Ligands: BCR.6, CLA.30, CLA.46 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain H, Hydrophobic interactions: A:I.306, A:M.310, H:Y.76 Hydrogen bonds: A:G.318 Salt bridges: A:H.319 Metal complexes: A:H.319 CLA.46: 8 residues within 4Å: Chain A: H.319, I.324, A.327, H.328 Ligands: CLA.12, CLA.30, CLA.31, CLA.45 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:I.324 Salt bridges: A:H.328 Metal complexes: A:H.328 CLA.47: 13 residues within 4Å: Chain A: F.332, T.333, L.425, R.428, M.429, H.432, I.436, H.439 Ligands: LHG.5, CLA.30, CLA.31, CLA.39, CLA.48 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:L.425, A:H.439 Hydrogen bonds: A:R.428 Salt bridges: A:R.428, A:H.432 CLA.48: 10 residues within 4Å: Chain A: A.435, H.439, W.442 Chain B: A.678, R.681, T.682 Ligands: LHG.5, CLA.39, CLA.47, CLA.106 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B, Hydrophobic interactions: A:W.442, B:R.681, B:T.682 Salt bridges: A:H.439, B:R.681 Metal complexes: A:H.439 CLA.49: 11 residues within 4Å: Chain A: W.442, I.445, F.446, F.449, H.450 Ligands: CLA.38, CLA.50, LHG.54, PQN.57, BCR.67, CLA.106 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:W.442, A:F.446, A:F.449 pi-Stacking: A:F.446 Metal complexes: A:H.450 CLA.50: 16 residues within 4Å: Chain A: F.449, G.453, L.454, I.456, H.457, T.460, M.461, R.466, D.469, F.471 Chain B: H.95 Ligands: CLA.49, LHG.54, CLA.70, CLA.74, CLA.104 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.456, A:H.457, A:T.460 Hydrogen bonds: A:R.466 Salt bridges: A:R.466 CLA.51: 14 residues within 4Å: Chain A: W.485, V.486, L.489, H.490, A.493, T.497, A.498, F.509 Ligands: BCR.10, CLA.27, CLA.33, CLA.34, CLA.52, CLA.53 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:W.485, A:V.486, A:T.497, A:F.509 CLA.52: 8 residues within 4Å: Chain A: T.497, A.498, P.499, N.500 Ligands: CLA.27, CLA.44, CLA.51, CLA.121 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:P.499 Hydrogen bonds: A:N.500 Metal complexes: A:T.497 CLA.53: 21 residues within 4Å: Chain A: Q.368, Y.371, F.482, A.483, V.486, Q.487, H.490, F.509, I.525, L.527, H.535, H.538, V.605, H.608, F.609, K.612 Ligands: CLA.33, CLA.34, CLA.38, CLA.39, CLA.51 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:Y.371, A:F.482, A:F.482, A:A.483, A:I.525, A:L.527, A:H.538, A:V.605, A:H.608, A:F.609, A:K.612 Hydrogen bonds: A:Q.487 Salt bridges: A:H.490 Metal complexes: A:H.535 CLA.55: 7 residues within 4Å: Chain B: H.308, K.309, P.311, L.312 Ligands: LHG.59, CLA.85, CLA.86 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:H.308, B:P.311, B:L.312 CLA.68: 26 residues within 4Å: Chain A: F.677, A.680, F.681, L.683, M.684, F.687, Y.692, W.693, L.696 Chain B: S.421, S.424, L.425, G.428, F.429, L.522, T.526, L.529, I.530, L.575, F.578, W.579 Ligands: PQN.1, CLA.41, CLA.42, BCR.65, BCR.66 15 PLIP interactions: 6 interactions with chain B, 9 interactions with chain A, Hydrophobic interactions: B:L.425, B:F.429, B:T.526, B:I.530, B:L.575, B:F.578, A:F.677, A:A.680, A:F.681, A:L.683, A:M.684, A:F.687, A:Y.692, A:W.693 Hydrogen bonds: A:Y.692 CLA.69: 25 residues within 4Å: Chain A: L.646, L.650, W.651 Chain B: T.431, L.432, Y.435, V.516, A.519, W.586, F.589, L.613, W.616, L.621, S.625, I.629, F.647, H.651, W.654, Y.714, T.717, Y.718, F.721 Ligands: CL0.4, CLA.13, CLA.42 25 PLIP interactions: 21 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:T.431, B:L.432, B:Y.435, B:Y.435, B:V.516, B:A.519, B:W.586, B:W.586, B:F.589, B:W.616, B:W.616, B:W.616, B:W.616, B:L.621, B:I.629, B:F.647, B:W.654, B:W.654, B:F.721, A:L.646, A:L.650, A:L.650, A:W.651 pi-Stacking: B:F.647 Metal complexes: B:H.651 CLA.70: 26 residues within 4Å: Chain A: N.441, C.444, I.445, G.448, F.449, F.452, I.456, F.540, L.547, I.548, L.593, F.596, W.597 Chain B: A.655, T.656, F.658, M.659, I.662, Y.667, W.668, L.671 Ligands: CLA.13, CLA.50, BCR.67, CLA.74, CLA.108 13 PLIP interactions: 5 interactions with chain B, 8 interactions with chain A, Hydrophobic interactions: B:A.655, B:F.658, B:I.662, B:Y.667, B:W.668, A:I.445, A:F.452, A:I.456, A:I.548, A:L.593, A:F.596 pi-Stacking: A:W.597, A:W.597 CLA.71: 24 residues within 4Å: Chain B: H.29, F.31, Y.43, I.46, S.49, H.50, H.53, I.54, F.168, R.174, H.178, L.182, L.328, H.329, Q.331, L.332, A.335, L.336, L.339 Ligands: CLA.72, CLA.77, CLA.87, CLA.92, CLA.102 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:F.31, B:F.31, B:Y.43, B:I.46, B:I.46, B:F.168, B:L.182, B:L.328, B:L.328, B:L.328, B:Q.331, B:L.332, B:L.332, B:L.339 Salt bridges: B:H.53 pi-Stacking: B:H.50, B:H.53 Metal complexes: B:H.50 CLA.72: 13 residues within 4Å: Chain B: H.29, H.53, I.57, W.60, I.376, F.379 Ligands: LMG.58, BCR.61, CLA.71, CLA.90, CLA.91, CLA.92, CLA.102 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:I.57, B:W.60, B:W.60, B:I.376, B:F.379 Metal complexes: B:H.53 CLA.73: 16 residues within 4Å: Chain B: T.64, A.88, H.89, N.114, I.115, A.116, Y.117, S.118, V.642, W.643, M.646 Ligands: BCR.67, CLA.90, CLA.92, CLA.103, CLA.104 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:T.64, B:A.88, B:Y.117, B:V.642, B:W.643, B:W.643 Hydrogen bonds: B:Y.117, B:S.118, B:S.118 Metal complexes: B:H.89 CLA.74: 6 residues within 4Å: Chain B: W.92, H.95 Ligands: CLA.13, CLA.50, CLA.70, CLA.104 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:W.92 CLA.75: 11 residues within 4Å: Chain B: F.47, F.51, L.148, F.151, A.152, L.155, H.156, F.161, W.167 Ligands: CLA.76, CLA.77 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.51, B:L.148, B:F.151, B:A.152, B:F.161, B:W.167 Metal complexes: B:H.156 CLA.76: 11 residues within 4Å: Chain B: W.167, N.170, S.173, H.177, T.293, N.294, W.295 Ligands: BCR.61, CLA.75, CLA.77, CLA.83 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:T.293, B:W.295 Hydrogen bonds: B:S.173 Metal complexes: B:H.177 CLA.77: 22 residues within 4Å: Chain B: F.47, H.50, F.51, I.54, W.123, W.167, F.168, N.170, S.173, R.174, H.177, H.178, G.181, L.182, F.183, Y.356 Ligands: BCR.61, CLA.71, CLA.75, CLA.76, CLA.81, CLA.91 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.47, B:W.123, B:W.167, B:W.167, B:W.167, B:F.168, B:R.174, B:R.174, B:L.182, B:L.182, B:F.183 Hydrogen bonds: B:H.50 Salt bridges: B:H.50 CLA.78: 16 residues within 4Å: Chain B: L.188, A.189, A.191, G.192, V.195, H.196, F.212, T.215, P.216, P.217, G.221, L.222, L.255 Ligands: BCR.60, BCR.62, CLA.105 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:L.188, B:A.191, B:V.195, B:P.217, B:L.222, B:L.222, B:L.222, B:L.255 CLA.79: 10 residues within 4Å: Chain B: W.230, L.255, F.257, H.275, L.278, A.279, V.282, W.490 Ligands: LMU.56, CLA.80 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:W.230, B:W.230, B:L.255, B:L.255, B:L.278, B:L.278, B:A.279, B:V.282, B:W.490 pi-Stacking: B:W.230 Metal complexes: B:H.275 CLA.80: 19 residues within 4Å: Chain B: T.256, F.257, L.268, D.272, I.273, H.275, H.276, A.279, I.280, I.283, H.349, L.353, W.494 Ligands: CLA.79, CLA.81, CLA.87, CLA.89, CLA.97, CLA.98 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.257, B:F.257, B:F.257, B:L.268, B:D.272, B:H.275, B:H.276, B:A.279, B:I.280, B:W.494 Hydrogen bonds: B:G.260, B:H.349 Metal complexes: B:H.276 CLA.81: 24 residues within 4Å: Chain B: W.123, T.126, I.127, F.183, S.186, S.187, W.190, I.273, H.276, H.277, I.280, I.342, V.346, H.349, M.350, S.355, Y.356 Ligands: CLA.77, CLA.80, CLA.82, CLA.87, CLA.89, CLA.91, CLA.97 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:W.190, B:I.280, B:I.342, B:V.346 Salt bridges: B:H.277 pi-Stacking: B:W.190, B:H.276 Metal complexes: B:H.277 CLA.82: 18 residues within 4Å: Chain B: L.179, F.183, I.283, F.284, I.286, A.287, M.290, Y.291, I.301, I.304 Ligands: BCR.64, CLA.81, CLA.84, CLA.85, CLA.86, CLA.87, CLA.89, CLA.97 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:L.179, B:F.183, B:F.284, B:I.286, B:A.287 Hydrogen bonds: B:Y.291 CLA.83: 11 residues within 4Å: Chain B: N.176, H.177, A.180, G.181, V.185, H.289, T.293, W.295, I.297 Ligands: BCR.60, CLA.76 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:N.176, B:V.185, B:W.295, B:W.295, B:W.295 Hydrogen bonds: B:N.176 Metal complexes: B:H.289 CLA.84: 10 residues within 4Å: Chain B: I.286, H.289, M.290, I.297, G.298, H.299 Ligands: BCR.60, CLA.82, CLA.85, CLA.86 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:M.290, B:I.297 Hydrogen bonds: B:G.298 Metal complexes: B:H.299 CLA.85: 9 residues within 4Å: Chain B: M.290, H.299, I.304, A.307, H.308 Ligands: CLA.55, CLA.82, CLA.84, CLA.86 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:I.304 Metal complexes: B:H.308 CLA.86: 16 residues within 4Å: Chain B: L.305, H.308, T.313, H.317, L.320, I.324, V.405, M.409 Ligands: CLA.55, LHG.59, BCR.63, CLA.82, CLA.84, CLA.85, CLA.87, CLA.93 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:L.305, B:T.313, B:L.320, B:I.324, B:V.405, B:V.405 Salt bridges: B:H.308 Metal complexes: B:H.317 CLA.87: 24 residues within 4Å: Chain B: A.171, R.174, L.175, H.178, L.179, F.183, I.280, F.284, I.301, L.305, Y.321, I.324, N.325, L.334, A.335, S.338, I.342 Ligands: BCR.63, CLA.71, CLA.80, CLA.81, CLA.82, CLA.86, CLA.89 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:R.174, B:L.175, B:L.175, B:L.175, B:I.280, B:F.284, B:F.284, B:I.301, B:I.301, B:L.305, B:Y.321, B:Y.321, B:I.324, B:N.325, B:L.334, B:L.334, B:A.335, B:I.342 Hydrogen bonds: B:R.174 Salt bridges: B:H.178 CLA.88: 19 residues within 4Å: Chain B: V.341, S.344, L.345, Q.348, Q.374, M.381, F.385, L.524, T.527, A.528, L.531, M.580, L.587 Ligands: LHG.59, BCR.64, CLA.89, CLA.97, CLA.99, CLA.101 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:M.381, B:F.385, B:F.385, B:L.524, B:T.527, B:A.528, B:L.531, B:M.580, B:L.587 Hydrogen bonds: B:S.344, B:Q.348, B:Q.374 CLA.89: 20 residues within 4Å: Chain B: S.338, V.341, L.345, Q.348, H.349, Y.351, S.352, L.353, L.505 Ligands: LHG.59, BCR.63, BCR.64, CLA.80, CLA.81, CLA.82, CLA.87, CLA.88, CLA.97, CLA.99, CLA.101 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:V.341, B:L.505 Metal complexes: B:H.349 CLA.90: 19 residues within 4Å: Chain B: W.60, T.64, Y.117, S.118, A.368, T.371, H.372, Y.375, I.376, F.379, L.716, A.719, L.722, I.723 Ligands: LMG.58, CLA.72, CLA.73, CLA.91, CLA.103 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:A.368, B:T.371, B:Y.375, B:Y.375, B:I.376, B:F.379, B:L.716, B:A.719, B:L.722 CLA.91: 24 residues within 4Å: Chain B: W.60, T.61, S.118, G.119, W.123, S.186, A.189, L.339, I.342, T.343, V.346, M.350, Y.356, L.369, H.372, H.373, I.376 Ligands: BCR.61, BCR.62, CLA.72, CLA.77, CLA.81, CLA.90, CLA.105 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:W.60, B:T.61, B:W.123, B:W.123, B:L.339, B:I.342, B:V.346, B:V.346, B:L.369, B:I.376 Hydrogen bonds: B:Y.356 pi-Stacking: B:H.372 Metal complexes: B:H.373 CLA.92: 24 residues within 4Å: Chain B: I.25, A.26, T.27, H.29, D.30, H.329, L.332, L.336, F.379, G.383, H.387, I.390, R.394, Y.552, W.570, F.573, V.712 Ligands: LMG.58, BCR.67, CLA.71, CLA.72, CLA.73, CLA.102, CLA.108 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:I.25, B:D.30, B:L.332, B:L.332, B:L.336, B:L.336, B:F.573, B:F.573, B:V.712, B:V.712 Hydrogen bonds: B:H.29, B:D.30 Salt bridges: B:H.29, B:R.394 pi-Stacking: B:F.573 Metal complexes: B:H.387 CLA.93: 13 residues within 4Å: Chain B: L.312, T.313, V.405, R.408, M.409, H.412, L.416, H.419 Ligands: LHG.59, BCR.63, CLA.86, CLA.94, CLA.101 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:T.313, B:V.405, B:H.412 Hydrogen bonds: B:R.408 Salt bridges: B:R.408 CLA.94: 16 residues within 4Å: Chain A: W.702, A.703, K.706, L.707 Chain B: A.415, H.419, W.422 Chain F: V.154, D.157 Ligands: CLA.40, LHG.59, CLA.93, CLA.95, CLA.99, CLA.101, BCR.114 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B, Hydrophobic interactions: A:L.707, B:W.422, B:W.422 Salt bridges: A:K.706 Metal complexes: B:H.419 CLA.95: 21 residues within 4Å: Chain B: W.422, L.425, F.426, F.429, H.430 Chain F: F.87, P.90, S.91, F.94, L.95, A.98, I.101, W.140 Ligands: CLA.40, BCR.65, BCR.66, CLA.94, CLA.96, CLA.100, BCR.113, BCR.114 10 PLIP interactions: 6 interactions with chain F, 4 interactions with chain B, Hydrophobic interactions: F:F.87, F:F.94, F:F.94, F:L.95, F:W.140, B:W.422, B:F.426, B:F.429 pi-Stacking: F:F.94 Metal complexes: B:H.430 CLA.96: 26 residues within 4Å: Chain A: V.121 Chain B: G.433, V.436, H.437, V.440, K.449, I.451 Chain F: Y.62, L.93, Y.96, I.97 Chain G: F.29, N.30, D.35, L.36, L.37 Ligands: BCR.11, CLA.20, CLA.35, CLA.42, BCR.65, BCR.66, CLA.95, BCR.113, CLA.116, CLA.117 14 PLIP interactions: 3 interactions with chain G, 4 interactions with chain F, 6 interactions with chain B, 1 interactions with chain A, Hydrogen bonds: G:N.30, G:D.35, G:L.36, B:K.449 Hydrophobic interactions: F:L.93, F:L.93, F:Y.96, F:I.97, B:H.437, B:V.440, B:I.451, A:V.121 Salt bridges: B:K.449 Metal complexes: B:H.437 CLA.97: 18 residues within 4Å: Chain B: W.460, I.461, T.464, S.465, L.475, L.476, W.490, L.491, W.494 Ligands: LMU.56, BCR.64, CLA.80, CLA.81, CLA.82, CLA.88, CLA.89, CLA.98, CLA.99 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:W.460, B:I.461, B:L.475 CLA.98: 8 residues within 4Å: Chain B: L.475, I.482, T.486, W.490 Ligands: LMU.56, BCR.64, CLA.80, CLA.97 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:L.475, B:I.482, B:T.486, B:W.490 Hydrogen bonds: B:T.486 CLA.99: 26 residues within 4Å: Chain B: Q.348, Y.351, Y.370, F.457, A.458, I.461, Q.462, F.506, L.507, I.509, H.517, I.520, L.524, L.587, Y.590, W.591, H.595 Ligands: LHG.59, CLA.88, CLA.89, CLA.94, CLA.97, CLA.100, CLA.101, CLA.112, BCR.114 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:Y.351, B:I.461, B:I.509, B:I.520, B:I.520, B:L.524, B:L.587, B:L.587, B:Y.590, B:Y.590, B:W.591 Hydrogen bonds: B:Q.462 Metal complexes: B:H.517 CLA.100: 22 residues within 4Å: Chain B: F.426, L.427, E.454, P.455, V.456, F.457, A.458, F.514, H.517, H.518, A.521, H.525 Chain F: V.77, F.87, S.91, L.95 Ligands: CLA.95, CLA.99, CLA.101, CLA.112, BCR.113, BCR.114 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain F, Hydrophobic interactions: B:F.426, B:L.427, B:F.457, B:F.457, B:H.517, B:A.521, F:V.77, F:F.87, F:L.95 Hydrogen bonds: B:F.457, B:A.458 Salt bridges: B:H.517, B:H.518 pi-Stacking: B:F.514 Metal complexes: B:H.518 CLA.101: 14 residues within 4Å: Chain B: L.420, W.422, V.423, A.521, H.525, I.532 Ligands: LHG.59, BCR.64, CLA.88, CLA.89, CLA.93, CLA.94, CLA.99, CLA.100 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:L.420, B:L.420, B:W.422, B:V.423, B:I.532 Salt bridges: B:H.525 Metal complexes: B:H.525 CLA.102: 16 residues within 4Å: Chain B: F.5, F.8, I.25, A.28, H.29, F.31, H.34, S.49, I.56 Chain I: S.26, L.29, Y.30 Ligands: LMG.58, CLA.71, CLA.72, CLA.92 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain I, Hydrophobic interactions: B:F.5, B:I.25, B:I.25, B:A.28, B:F.31, B:I.56, I:L.29 CLA.103: 17 residues within 4Å: Chain B: L.59, W.60, S.62, G.63, F.66, H.67, W.70, Q.71, H.89, W.92, L.143 Chain I: A.11, L.12, A.15 Ligands: CLA.73, CLA.90, CLA.104 8 PLIP interactions: 2 interactions with chain I, 6 interactions with chain B, Hydrophobic interactions: I:L.12, I:A.15, B:F.66, B:F.66, B:W.70, B:L.143 Hydrogen bonds: B:Q.71 Salt bridges: B:H.67 CLA.104: 20 residues within 4Å: Chain A: T.460, A.463, L.464 Chain B: H.89, A.90, I.91, W.92, D.93, H.95, F.96, N.114, S.641, V.642, W.645 Ligands: CLA.13, CLA.50, BCR.67, CLA.73, CLA.74, CLA.103 11 PLIP interactions: 4 interactions with chain A, 7 interactions with chain B, Hydrophobic interactions: A:T.460, A:A.463, A:L.464, A:L.464, B:I.91, B:I.91, B:F.96, B:W.645 Hydrogen bonds: B:W.92 Salt bridges: B:H.89 Metal complexes: B:D.93 CLA.105: 20 residues within 4Å: Chain B: I.127, G.128, M.129, E.134, S.137, G.138, F.141, S.186, A.189, W.190, G.192, H.193, H.196, V.197, G.208, W.209, F.212 Ligands: BCR.62, CLA.78, CLA.91 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:I.127, B:W.190, B:H.193, B:V.197, B:W.209, B:W.209, B:F.212 Hydrogen bonds: B:W.209 pi-Stacking: B:W.190, B:W.209 Metal complexes: B:H.193 CLA.106: 14 residues within 4Å: Chain A: S.438, N.441, W.442, I.445 Chain B: I.675, A.678, H.679, T.682, A.685, V.688 Ligands: CLA.48, CLA.49, BCR.67, CLA.107 7 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: B:I.675, B:I.675, B:T.682, B:V.688, A:I.445 pi-Stacking: B:H.679 Metal complexes: H2O.1 CLA.107: 15 residues within 4Å: Chain B: T.18, I.21, W.22, I.675, V.676, H.679, V.688, R.689, W.690, K.691, D.692, P.694, V.695 Ligands: PQN.57, CLA.106 12 PLIP interactions: 11 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:T.18, B:I.21, B:W.22, B:I.675, B:V.676, B:V.688, B:W.690, B:W.690, B:P.694 Hydrogen bonds: B:K.691 Water bridges: B:D.692 Metal complexes: H2O.1 CLA.108: 14 residues within 4Å: Chain B: W.22, F.649, V.653, T.656, F.660, L.697, V.705, A.708, H.709 Ligands: PQN.57, LMG.58, BCR.67, CLA.70, CLA.92 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:F.649, B:V.653, B:L.697 CLA.112: 11 residues within 4Å: Chain B: F.457, W.460 Chain F: D.78, G.79, R.80, F.81, L.88, I.92 Ligands: CLA.99, CLA.100, BCR.114 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain F, Hydrophobic interactions: B:F.457, B:F.457, B:F.457, B:W.460, F:R.80, F:I.92 Metal complexes: F:D.78 CLA.115: 27 residues within 4Å: Chain A: T.45, I.48, W.49, I.700, V.701, H.704, V.709, P.711, P.715, R.716 Chain F: Y.108, L.109, E.122, I.125, M.134, L.135 Chain G: A.11, M.14, I.15, A.17, L.18, F.21 Ligands: PQN.1, CLA.14, CLA.40, BCR.66, CLA.116 14 PLIP interactions: 4 interactions with chain G, 7 interactions with chain A, 2 interactions with chain F, 1 Ligand-Water interactions, Hydrophobic interactions: G:A.11, G:I.15, G:L.18, G:F.21, A:T.45, A:W.49, A:I.700, A:V.701, A:P.711, A:P.711, A:P.715, F:L.109, F:L.135 Metal complexes: H2O.1 CLA.116: 14 residues within 4Å: Chain F: I.97, W.100, I.101, M.134, L.135 Chain G: L.18, T.22, L.26 Ligands: CLA.14, CLA.40, CLA.41, BCR.66, CLA.96, CLA.115 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain G, Hydrophobic interactions: F:I.97, F:W.100, F:I.101, G:L.18, G:T.22, G:L.26 CLA.117: 6 residues within 4Å: Chain F: I.89, L.93 Chain G: F.29, H.39 Ligands: CLA.96, BCR.113 5 PLIP interactions: 1 interactions with chain G, 4 interactions with chain F, Hydrophobic interactions: G:F.29, F:I.89, F:I.89, F:L.93, F:L.93 CLA.120: 7 residues within 4Å: Chain G: F.21, G.24, I.25, E.28, R.31, F.32 Ligands: BCR.119 5 PLIP interactions: 5 interactions with chain G, Hydrophobic interactions: G:F.32 Salt bridges: G:R.31 pi-Cation interactions: G:R.31, G:R.31 Metal complexes: G:E.28 CLA.121: 7 residues within 4Å: Chain H: L.114, G.117, M.118, S.124, S.125 Ligands: CLA.44, CLA.52 1 PLIP interactions: 1 interactions with chain H, Hydrogen bonds: H:S.124 CLA.122: 10 residues within 4Å: Chain A: F.263, F.264 Chain H: A.54, S.59, I.62, I.63, L.66, H.112 Ligands: BCR.7, CLA.29 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain A, Hydrophobic interactions: H:I.62, A:F.263, A:F.264

2 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)

LMU.56: 8 residues within 4Å: Chain B: I.482, T.486, G.487, A.488, A.489 Ligands: CLA.79, CLA.97, CLA.98 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.482 Hydrogen bonds: B:G.487, B:A.489 LMU.118: 6 residues within 4Å: Chain F: I.125, V.127, P.128 Chain G: K.5, S.6, S.9 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain G Hydrophobic interactions: F:V.127 Hydrogen bonds: G:K.5, G:K.5 Salt bridges: G:K.5

1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.58: 22 residues within 4Å: Chain B: L.12, W.22, Y.23, I.25, A.26, S.553, W.570, F.573, S.698, V.700, Q.701, L.704, A.708, T.711, V.712, V.715 Ligands: PQN.57, CLA.72, CLA.90, CLA.92, CLA.102, CLA.108 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.22, B:Y.23, B:I.25, B:A.26, B:F.573, B:Q.701, B:L.704, B:L.704, B:T.711, B:V.712, B:V.715 Hydrogen bonds: B:S.698

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.109: 7 residues within 4Å: Chain A: R.462, T.641, N.643, G.644, R.647 Chain B: Y.632, N.633 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazor, Y. et al., Crystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803. Elife (2014)

Release Date

2014-02-05

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I subunit II: D
Photosystem I reaction center subunit IV: E
Photosystem I subunit III: F
Photosystem I reaction center subunit IX: G
Photosystem I reaction center subunit PsaK: H
Photosystem I reaction center subunit XII: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
J

H
K

I
M

Membrane

We predict this structure to be a membrane protein.
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Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I subunit II

Photosystem I reaction center subunit IV

Photosystem I subunit III

Photosystem I reaction center subunit IX

Photosystem I reaction center subunit PsaK

Photosystem I reaction center subunit XII

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