SMTL ID : 4ku0.1

Enterobacteria phage T4 gp5.4 PAAR repeat protein in complex with T4 gp5 beta-helix fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

hetero-3-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.2: 16 residues within 4Å: Chain A: I.17, V.19, V.23, I.25, T.41, Q.47 Chain B: I.25, V.27, I.33 Chain C: K.9, V.11, G.15, T.16, I.17, I.33, V.35 11 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: B:I.25, B:V.27, B:I.33, A:I.17, A:V.19, A:I.25, C:V.11, C:I.33, C:V.35 Hydrogen bonds: A:Q.47 Water bridges: A:N.49

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: I.81, S.82, S.83 Chain B: D.89, G.90 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:G.90 Hydrogen bonds: A:S.82 EDO.6: 3 residues within 4Å: Chain C: R.92, D.94 Chain D: Y.67 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.94 Water bridges: C:R.92 EDO.9: 4 residues within 4Å: Chain D: Y.5, T.30, G.31, I.33 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.90 Water bridges: D:G.31 EDO.10: 4 residues within 4Å: Chain D: S.1, Q.75, F.94, I.95 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.1

1 x STE: STEARIC ACID(Non-covalent)

STE.4: 16 residues within 4Å: Chain A: T.16, I.33, V.35, A.39, T.41 Chain B: I.17, V.23, I.25, T.41, V.43, Q.47 Chain C: E.7, K.9, I.25, A.31, I.33 14 PLIP interactions: 6 interactions with chain B, 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: B:I.17, B:V.23, B:I.25, B:T.41, B:V.43, C:E.7, C:K.9, C:A.31, C:I.33, A:I.33, A:V.35, A:A.39 Water bridges: B:Q.47 Hydrogen bonds: A:T.41

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.5: 12 residues within 4Å: Chain A: I.25, I.33 Chain B: G.15, T.16, I.33, V.35, A.39 Chain C: V.19, V.23, I.25, V.43, Q.47 11 PLIP interactions: 6 interactions with chain C, 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: C:V.19, C:V.23, C:I.25, B:I.33, B:V.35, B:A.39, A:I.25, A:I.33 Water bridges: C:Q.47, C:Q.47, C:N.49

1 x FE: FE (III) ION(Non-covalent)

FE.7: 4 residues within 4Å: Chain D: H.13, H.45, H.55, C.82 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.13, D:H.45, D:H.55, D:C.82

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 7 residues within 4Å: Chain D: A.23, T.24, Q.25, V.35, L.36, V.37, D.40 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.24, D:Q.25, D:V.35, D:V.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Crystall structute of the business end of the T4 cell-puncturing device. To be Published

Release Date

2014-05-21

Peptides

Tail-associated lysozyme: ABC
Uncharacterized 10.2 kDa protein in segC-Gp6 intergenic region: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tail-associated lysozyme

Uncharacterized 10.2 kDa protein in segC-Gp6 intergenic region

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