SMTL ID : 4l1m.1 (2 other biounits)

Structure of the first RCC1-like domain of HERC2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: C.381, S.382, E.383, W.384 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.383, A:W.384 SO4.2: 4 residues within 4Å: Chain A: C.247, K.248, T.249, K.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.248, A:T.249 SO4.3: 5 residues within 4Å: Chain A: S.268, Q.269, K.285, R.290, T.321 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.268, A:S.268 Water bridges: A:N.288 Salt bridges: A:K.285, A:R.290 SO4.4: 4 residues within 4Å: Chain A: K.63, R.64, H.107, Y.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.63, A:Y.109 Salt bridges: A:H.107

9 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 3 residues within 4Å: Chain A: R.128, T.163, R.179 No protein-ligand interaction detected (PLIP) UNX.6: 6 residues within 4Å: Chain A: G.278, Q.279, L.308, Q.309, K.311, V.313 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: S.81, D.82 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: E.138 No protein-ligand interaction detected (PLIP) UNX.9: 6 residues within 4Å: Chain A: G.130, H.131, I.143, S.144, A.145, I.195 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: S.162, G.215 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain A: R.265 No protein-ligand interaction detected (PLIP) UNX.12: 2 residues within 4Å: Chain A: Y.301 Ligands: UNX.13 No protein-ligand interaction detected (PLIP) UNX.13: 4 residues within 4Å: Chain A: G.242, G.243, R.300 Ligands: UNX.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tempel, W. et al., Structure of the first RCC1-like domain of HERC2. TO BE PUBLISHED

Release Date

2013-07-03

Peptides

E3 ubiquitin-protein ligase HERC2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase HERC2

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