- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x S7M: [(3S)-3-amino-3-carboxypropyl]{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}ethyls ulfonium(Non-covalent)
S7M.2: 18 residues within 4Å:- Chain A: H.61, N.63, R.94, D.147, L.148, N.162, D.163, I.352
- Chain B: H.32, P.33, D.202, K.204, A.219, Y.273, S.280, G.284, D.285
- Ligands: DPO.3
18 PLIP interactions:8 interactions with chain A, 10 interactions with chain B- Hydrophobic interactions: A:L.148, A:D.163, A:I.352
- Hydrogen bonds: A:N.63, A:D.147, A:N.162, B:D.202, B:K.204, B:Y.273, B:S.280, B:D.285, B:D.285
- Salt bridges: A:H.61, A:D.163, B:D.285
- Water bridges: B:D.285
- pi-Stacking: B:Y.273, B:Y.273
S7M.7: 18 residues within 4Å:- Chain C: H.61, N.63, R.94, D.147, L.148, N.162, D.163, I.352
- Chain D: H.32, P.33, D.202, K.204, A.219, Y.273, S.280, G.284, D.285
- Ligands: DPO.8
20 PLIP interactions:11 interactions with chain C, 9 interactions with chain D- Hydrophobic interactions: C:L.148, C:D.163, C:I.352
- Hydrogen bonds: C:N.63, C:D.147, C:N.162, D:D.202, D:K.204, D:S.280, D:D.285, D:D.285, D:D.285
- Water bridges: C:K.66, C:D.147, C:D.163
- Salt bridges: C:H.61, C:D.163, D:D.285
- pi-Stacking: D:Y.273, D:Y.273
- 2 x DPO: DIPHOSPHATE(Non-covalent)
DPO.3: 16 residues within 4Å:- Chain A: D.65, K.66, D.163, E.308, K.313, H.318
- Chain B: K.28, H.32, D.34, K.204, D.285, R.291
- Ligands: MG.1, S7M.2, PO4.4, MG.5
13 PLIP interactions:5 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:R.291, A:E.308
- Salt bridges: B:K.28, B:K.28, B:H.32, B:K.204, A:K.66, A:K.313, A:H.318
- Water bridges: A:K.66, A:K.66, A:D.163, A:D.163
DPO.8: 16 residues within 4Å:- Chain C: D.65, K.66, D.163, E.308, K.313, H.318
- Chain D: K.28, H.32, D.34, K.204, D.285, R.291
- Ligands: MG.6, S7M.7, PO4.9, MG.10
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:E.308, D:R.291
- Water bridges: C:K.66, C:K.66
- Salt bridges: C:K.66, C:K.313, C:H.318, D:K.28, D:K.28, D:H.32, D:K.204
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 10 residues within 4Å:- Chain A: L.307, E.308, A.309, K.313
- Chain B: K.28, D.34, R.291
- Ligands: MG.1, DPO.3, MG.5
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:L.307, A:A.309
- Water bridges: A:K.66, A:K.66
- Salt bridges: A:K.313, B:K.28, B:R.291
PO4.9: 10 residues within 4Å:- Chain C: L.307, E.308, A.309, K.313
- Chain D: K.28, D.34, R.291
- Ligands: MG.6, DPO.8, MG.10
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:L.307, C:A.309
- Water bridges: C:K.66, C:K.66, C:E.308
- Salt bridges: C:K.313, D:K.28, D:R.291
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, F. et al., Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus. Febs J. (2014)
- Release Date
- 2013-06-19
- Peptides
- S-adenosylmethionine synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x S7M: [(3S)-3-amino-3-carboxypropyl]{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}ethyls ulfonium(Non-covalent)
- 2 x DPO: DIPHOSPHATE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, F. et al., Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus. Febs J. (2014)
- Release Date
- 2013-06-19
- Peptides
- S-adenosylmethionine synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B