SMTL ID : 4led.2 (1 other biounit)

The Crystal Structure of Pyocin L1 bound to D-rhamnose at 2.37 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

4 x XXR: alpha-D-rhamnopyranose(Non-covalent)

XXR.1: 8 residues within 4Å: Chain A: Q.178, D.180, N.182, V.184, Y.186, A.191, H.194, A.198 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.191 Hydrogen bonds: A:Q.178, A:Q.178, A:N.182, A:Y.186 Salt bridges: A:H.194 XXR.2: 9 residues within 4Å: Chain A: Q.148, D.150, N.152, Y.156, V.163, A.166, Y.168, M.170 Ligands: XXR.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.163, A:A.166, A:Y.168 Hydrogen bonds: A:Q.148, A:Q.148, A:N.152, A:Y.156 Water bridges: A:Y.168 XXR.3: 7 residues within 4Å: Chain A: Q.29, D.31, N.33, V.35, Y.37, N.46, P.49 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.29, A:D.31, A:N.33, A:Y.37, A:Y.37 XXR.4: 4 residues within 4Å: Chain A: Q.148, G.149, D.150 Ligands: XXR.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.149, A:D.150, A:D.150, A:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCaughey, L.C. et al., Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor. Plos Pathog. (2014)

Release Date

2014-02-19

Peptides

Pyocin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pyocin L1

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