- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: N.202, D.216
- Ligands: GNP.1, MN.3
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.216, H2O.1
MN.3: 4 residues within 4Å:- Chain A: Y.53, D.216
- Ligands: GNP.1, MN.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.216, A:D.216, H2O.2, H2O.2
MN.11: 4 residues within 4Å:- Chain B: Y.53, D.216
- Ligands: GNP.10, MN.12
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.216, B:D.216, H2O.12, H2O.13
MN.12: 4 residues within 4Å:- Chain B: N.202, D.216
- Ligands: GNP.10, MN.11
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.216, H2O.11
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: V.48, N.159, D.161
- Ligands: GNP.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.159, A:D.161, A:D.161
- Water bridges: A:F.162
GOL.13: 4 residues within 4Å:- Chain B: V.48, N.159, D.161
- Ligands: GNP.10
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.159, B:D.161
- Water bridges: B:F.162
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: R.83, R.196, L.219, N.230
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.230
- Water bridges: A:R.196, A:E.221
- Salt bridges: A:K.80, A:R.83, A:R.196
SO4.6: 3 residues within 4Å:- Chain A: R.232, R.236, N.279
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.279
- Water bridges: A:R.232, A:R.232, A:N.279, A:N.279
- Salt bridges: A:R.232, A:R.236, A:K.239
SO4.7: 3 residues within 4Å:- Chain A: I.164, K.168
- Chain B: R.163
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.163, B:R.163
- Salt bridges: B:R.163, A:K.168
SO4.8: 5 residues within 4Å:- Chain A: R.318, P.320, W.321, H.322, I.339
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.321, A:H.322
- Salt bridges: A:R.318, A:H.322
SO4.9: 5 residues within 4Å:- Chain A: R.270, K.319, R.323
- Chain B: N.326, D.327
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.270, A:K.319, A:R.323
- Hydrogen bonds: B:D.327
SO4.14: 4 residues within 4Å:- Chain B: R.83, R.196, L.219, N.230
8 PLIP interactions:8 interactions with chain B- Water bridges: B:K.80, B:R.83, B:R.196, B:R.196, B:E.221
- Salt bridges: B:K.80, B:R.83, B:R.196
SO4.15: 5 residues within 4Å:- Chain A: N.326, D.327
- Chain B: R.270, K.319, R.323
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Salt bridges: B:R.270, B:R.323
- Hydrogen bonds: A:D.327, A:D.327, A:D.327
SO4.16: 3 residues within 4Å:- Chain A: R.163
- Chain B: I.164, K.168
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Water bridges: B:K.168, A:R.163, A:R.163
- Salt bridges: B:K.168, A:R.163
SO4.17: 5 residues within 4Å:- Chain B: R.318, P.320, W.321, H.322, I.339
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:W.321, B:H.322
- Water bridges: B:R.318
- Salt bridges: B:R.318, B:H.322
SO4.18: 3 residues within 4Å:- Chain B: R.232, R.236, N.279
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:N.279
- Water bridges: B:R.232, B:R.232, B:N.279, B:N.279
- Salt bridges: B:R.232, B:R.236, B:K.239
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, H. et al., The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-03-05
- Peptides
- Casein kinase II subunit alpha: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Liu, H. et al., The multiple nucleotide-divalent cation binding modes of Saccharomyces cerevisiae CK2 alpha indicate a possible co-substrate hydrolysis product (ADP/GDP) release pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-03-05
- Peptides
- Casein kinase II subunit alpha: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B