SMTL ID : 4lgl.1

Crystal Structure of Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803, apo form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 7 residues within 4Å: Chain A: D.31, S.32, D.35, R.36 Chain B: Y.369, H.370, G.374 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:H.370, B:G.374, A:D.31, A:S.32, A:S.32 Water bridges: B:H.370, A:A.30 TRS.3: 6 residues within 4Å: Chain A: H.370, H.501 Chain B: D.31, S.32, D.35, R.36 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:H.370, A:G.374, B:S.32, B:S.32, B:D.35 Water bridges: A:H.501

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: S.80, M.794, G.795, P.796, Q.797 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: S.80, G.795, P.796, Q.797 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasse, D. et al., Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem. (2013)

Release Date

2013-10-16

Peptides

Glycine dehydrogenase [decarboxylating]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycine dehydrogenase [decarboxylating]

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