- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GLY: GLYCINE(Non-covalent)
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.5: 7 residues within 4Å:- Chain A: S.523, F.861, G.862, F.863, E.888, R.891, W.948
2 PLIP interactions:2 interactions with chain A- Water bridges: A:T.522, A:E.888
BCT.6: 7 residues within 4Å:- Chain A: S.82, Y.84, G.85
- Chain B: I.112, E.446, T.447, T.449
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.82, A:S.82, A:G.85, B:T.447
- Water bridges: A:S.82
BCT.7: 5 residues within 4Å:- Chain A: T.151, D.155, D.494, S.973, E.975
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.494, A:S.973, A:S.973, A:E.975
BCT.20: 7 residues within 4Å:- Chain B: S.523, F.861, G.862, F.863, E.888, R.891, W.948
4 PLIP interactions:4 interactions with chain B- Water bridges: B:S.523, B:S.523, B:F.861, B:W.948
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 4 residues within 4Å:- Chain A: D.581, K.745, S.746, H.747
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.746, A:H.747
- Water bridges: A:D.718, A:D.718
- Salt bridges: A:H.747
PO4.9: 4 residues within 4Å:- Chain A: Q.76, L.77, P.78, W.573
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.76, A:L.77, A:W.573
PO4.21: 4 residues within 4Å:- Chain B: D.581, K.745, S.746, H.747
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.581, B:S.746, B:H.747
- Salt bridges: B:H.747
PO4.22: 4 residues within 4Å:- Chain B: Q.76, L.77, P.78, W.573
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.76
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 5 residues within 4Å:- Chain A: D.894, A.898, P.945, A.946, P.947
1 PLIP interactions:1 interactions with chain A- Water bridges: A:P.945
EDO.11: 6 residues within 4Å:- Chain A: P.294, T.544, W.545, P.546, G.549, K.550
No protein-ligand interaction detected (PLIP)EDO.12: 7 residues within 4Å:- Chain A: G.126, W.127, A.130, R.142, E.514, D.517, G.734
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.142, A:D.517
EDO.13: 5 residues within 4Å:- Chain A: L.34, Q.797, G.798, K.801
- Ligands: EDO.16
4 PLIP interactions:4 interactions with chain A- Water bridges: A:S.80, A:M.794, A:G.798, A:K.801
EDO.14: 5 residues within 4Å:- Chain A: G.53, F.54, D.55, D.59, Q.63
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.55, A:D.59, A:Q.63
EDO.15: 7 residues within 4Å:- Chain A: N.811, A.814, K.815, E.818, R.826, E.830, L.831
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.811, A:R.826, A:R.826
EDO.16: 4 residues within 4Å:- Chain A: Q.797, T.800, K.801
- Ligands: EDO.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.797
EDO.17: 3 residues within 4Å:- Chain A: F.71, P.72, R.73
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.70
EDO.23: 6 residues within 4Å:- Chain B: P.294, T.544, W.545, P.546, G.549, K.550
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.545
EDO.24: 5 residues within 4Å:- Chain B: D.894, A.898, P.945, A.946, P.947
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.894
EDO.25: 3 residues within 4Å:- Chain B: S.229, H.257, Q.258
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.229, B:Q.258
- Water bridges: B:I.230
EDO.26: 8 residues within 4Å:- Chain B: I.69, R.70, F.71, P.72, C.710, R.711, D.714, F.715
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.711, B:R.711
EDO.27: 3 residues within 4Å:- Chain B: K.91, S.92, S.95
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.91, B:S.95
- Water bridges: B:S.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem. (2013)
- Release Date
- 2013-10-16
- Peptides
- Glycine dehydrogenase [decarboxylating]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GLY: GLYCINE(Non-covalent)
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure of the Homodimeric Glycine Decarboxylase P-protein from Synechocystis sp. PCC 6803 Suggests a Mechanism for Redox Regulation. J.Biol.Chem. (2013)
- Release Date
- 2013-10-16
- Peptides
- Glycine dehydrogenase [decarboxylating]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B