SMTL ID : 4ln3.5 (7 other biounits)

The crystal structure of hemagglutinin from a H7N9 influenza virus (A/Shanghai/1/2013)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.32, T.34, T.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.32, A:T.34 NAG.2: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.75 Hydrogen bonds: B:E.72, B:E.72, B:N.82 NAG.3: 3 residues within 4Å: Chain C: N.32, T.34, T.313 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain D: E.72, K.75, N.79, N.82 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:K.75 Hydrogen bonds: D:E.72, D:N.82 NAG.5: 3 residues within 4Å: Chain E: N.32, T.34, T.313 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain F: E.72, K.75, N.79, N.82 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:K.75 Hydrogen bonds: F:E.72, F:E.72, F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

Hemagglutinin

Hemagglutinin

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