SMTL ID : 4ln4.1 (7 other biounits)

The crystal structure of hemagglutinin form a h7n9 influenza virus (a/shanghai/1/2013) in complex with lstb

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Chain B: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 3 residues within 4Å: Chain C: N.32, T.313 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 3 residues within 4Å: Chain E: N.32, T.313 Chain F: L.52 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: K.164, N.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.164, A:N.235 NAG.5: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.72, B:N.82 NAG.6: 1 residues within 4Å: Chain C: N.235 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain D: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.72, D:N.82 NAG.8: 1 residues within 4Å: Chain E: N.235 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain F: E.72, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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