- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CF9: 2-OXO-2H-NAPHTHO[1,8-BC]FURAN-6-YL 4-NITROBENZOATE(Non-covalent)
CF9.9: 16 residues within 4Å:- Chain A: E.59, F.63, I.80, W.81, W.84, Y.95, L.144, C.147, H.148, Q.166, S.168, C.169, D.170, G.174, L.175, N.178
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.80, A:W.81, A:W.84, A:L.144, A:D.170
- Salt bridges: A:H.148
CF9.19: 16 residues within 4Å:- Chain B: E.59, F.63, I.80, W.81, W.84, Y.95, L.144, C.147, H.148, Q.166, S.168, C.169, D.170, G.174, L.175, N.178
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.80, B:W.81, B:W.84, B:L.144, B:D.170
- Salt bridges: B:H.148
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
UMP.10: 7 residues within 4Å:- Chain A: R.22, R.167, S.168
- Chain B: D.123, S.126, R.127, R.128
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:R.128
- Hydrogen bonds: B:R.127, A:R.22, A:S.168
- Water bridges: B:D.125
- Salt bridges: B:R.127, A:R.22, A:R.167
UMP.20: 7 residues within 4Å:- Chain A: D.123, S.126, R.127, R.128
- Chain B: R.22, R.167, S.168
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.22, B:S.168, A:R.127
- Salt bridges: B:R.22, B:R.167, A:R.127
- Hydrophobic interactions: A:R.128
- Water bridges: A:D.125
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferrari, S. et al., 2'-Deoxyuridine 5'-Monophosphate Substrate Displacement in Thymidylate Synthase through 6-Hydroxy-2H-naphtho[1,8-bc]furan-2-one Derivatives. J.Med.Chem. (2013)
- Release Date
- 2013-11-06
- Peptides
- Thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CF9: 2-OXO-2H-NAPHTHO[1,8-BC]FURAN-6-YL 4-NITROBENZOATE(Non-covalent)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferrari, S. et al., 2'-Deoxyuridine 5'-Monophosphate Substrate Displacement in Thymidylate Synthase through 6-Hydroxy-2H-naphtho[1,8-bc]furan-2-one Derivatives. J.Med.Chem. (2013)
- Release Date
- 2013-11-06
- Peptides
- Thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A