SMTL ID : 4ls5.1

Crystal structure of beta-ketoacyl-ACP synthase II (FabF) from Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: N.314, A.315, H.316, E.362, S.407, N.408 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.314, A:A.315, A:E.362, A:S.407, A:N.408 K.2: 3 residues within 4Å: Chain A: K.220, L.222, D.240 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.220, A:L.222, A:D.240, H2O.5, H2O.8 K.5: 6 residues within 4Å: Chain B: N.314, A.315, H.316, E.362, S.407, N.408 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:N.314, B:A.315, B:E.362, B:N.408 K.6: 3 residues within 4Å: Chain B: K.220, L.222, D.240 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:K.220, B:L.222, B:D.240, H2O.21

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: V.34, D.35, D.101, Y.267, L.368, E.372 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.101, A:E.372 GOL.4: 4 residues within 4Å: Chain A: V.72, A.81, R.82, Q.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.82, A:Q.89 GOL.7: 3 residues within 4Å: Chain B: T.224, N.225, P.226 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.224, B:T.224, B:D.240 Water bridges: B:D.240 GOL.8: 7 residues within 4Å: Chain A: P.145, F.146, P.149 Chain B: N.219, H.281, I.282, T.283 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.283, B:T.283, A:P.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trajtenberg, F. et al., Structural insights into bacterial resistance to cerulenin. Febs J. (2014)

Release Date

2014-04-02

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 2

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