SMTL ID : 4ls8.1

Crystal structure of Bacillus subtilis beta-ketoacyl-ACP synthase II (FabF) in a covalent complex with cerulenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 1XG: (3R,7E,10E)-3-HYDROXY-4-OXODODECA-7,10-DIENAMIDE(Non-covalent)(Covalent)

1XG.1: 13 residues within 4Å: Chain A: I.122, L.125, A.176, C.177, S.212, F.216, H.316, H.353, L.355, L.410, G.411, F.412 Chain B: M.151 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.122, A:I.122, A:L.125, A:A.176, A:F.216, A:L.355 Hydrogen bonds: A:C.177, A:F.412 Water bridges: A:N.323 1XG.8: 14 residues within 4Å: Chain A: V.148, M.151 Chain B: I.122, L.125, A.176, C.177, S.212, F.216, H.316, H.353, L.355, L.410, G.411, F.412 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.122, B:I.122, B:I.122, B:L.125, B:A.176, B:F.216, B:F.216, B:L.355, A:V.148 Hydrogen bonds: B:C.177, B:F.412

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: R.53, A.206, P.207, L.208, E.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.53, A:L.208, A:E.246, A:E.246 NA.6: 5 residues within 4Å: Chain A: G.25, A.26, D.33, V.34, M.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.26, A:A.26, A:V.34 Water bridges: A:D.35 NA.9: 5 residues within 4Å: Chain A: I.152, D.154 Chain B: G.121, V.174, A.176 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.121, B:A.176

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: M.84, D.85, F.87, T.88, M.150 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: T.107, D.108, E.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.108, A:E.109 Water bridges: A:I.106 EDO.5: 7 residues within 4Å: Chain A: Y.273, G.274, S.275, E.298 Chain B: V.169, R.193, D.195 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.275, B:R.193, B:D.195 Water bridges: A:E.298, A:E.298 EDO.7: 6 residues within 4Å: Chain A: V.169, R.193, D.195 Chain B: Y.273, G.274, S.275 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.193, A:R.193, A:D.195, B:S.275, B:S.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trajtenberg, F. et al., Structural insights into bacterial resistance to cerulenin. Febs J. (2014)

Release Date

2014-04-02

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 2

Related Entries With Identical Sequence