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SMTL ID : 4m5t.1
(2 other biounits)
Disulfide trapped human alphaB crystallin core domain in complex with C-terminal peptide
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
GLU
-
ARG
-
THR
-
ILE
-
PRO
-
ILE
-
THR
-
ARG
-
GLU
:
Alpha-crystallin B chain
(Non-covalent)
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.1:
16 residues within 4Å:
Chain A:
L.23
,
V.25
,
K.26
,
V.27
,
L.28
,
P.64
,
L.65
,
I.67
,
T.68
,
S.69
,
S.70
,
L.71
,
S.72
,
S.73
,
L.77
,
T.78
25
PLIP interactions
:
25 interactions with chain A
Hydrophobic interactions:
A:L.23
,
A:V.25
,
A:V.25
,
A:V.27
,
A:L.28
,
A:L.71
,
A:L.77
Hydrogen bonds:
A:V.25
,
A:V.27
,
A:V.27
,
A:I.67
,
A:I.67
,
A:I.67
,
A:S.69
,
A:S.69
,
A:S.70
,
A:L.71
,
A:L.71
,
A:S.73
,
A:T.78
Water bridges:
A:V.25
,
A:V.25
,
A:S.72
,
A:S.72
,
A:S.72
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2:
15 residues within 4Å:
Chain B:
P.20
,
K.24
,
V.25
,
K.26
,
V.27
,
P.64
,
L.65
,
I.67
,
T.68
,
S.69
,
S.70
,
L.71
,
L.77
Ligands:
SO4.4
,
SO4.5
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:V.25
,
B:V.27
,
B:I.67
,
B:L.71
,
B:L.77
Hydrogen bonds:
B:V.25
,
B:V.25
,
B:V.27
,
B:P.64
,
B:I.67
,
B:S.69
,
B:L.71
,
B:L.71
Water bridges:
B:V.25
,
B:V.25
,
B:S.69
Salt bridges:
B:K.26
3 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.3:
4 residues within 4Å:
Chain A:
K.16
,
H.17
Chain B:
K.16
,
H.17
4
PLIP interactions
:
2 interactions with chain B
,
2 interactions with chain A
Salt bridges:
B:K.16
,
B:H.17
,
A:K.16
,
A:H.17
SO4.4:
3 residues within 4Å:
Chain B:
S.72
,
S.73
Ligands:
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:S.73
SO4.5:
3 residues within 4Å:
Ligands:
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2
,
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2
,
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hochberg, G.K. et al., The structured core domain of alpha B-crystallin can prevent amyloid fibrillation and associated toxicity. Proc.Natl.Acad.Sci.USA (2014)
Release Date
2014-04-09
Peptides
Alpha-crystallin B chain:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
Export Alignment
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Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
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Size
Charged
Polar
Proline
Ser/Thr
Cysteine
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No Colour
Background
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NGL
PV
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Alpha-crystallin B chain
Related Entries With Identical Sequence
4m5t.2
|
4m5t.3
Cartoon
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Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme