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SMTL ID : 4m5t.2
(2 other biounits)
Disulfide trapped human alphaB crystallin core domain in complex with C-terminal peptide
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
GLU
-
ARG
-
THR
-
ILE
-
PRO
-
ILE
-
THR
-
ARG
-
GLU
:
Alpha-crystallin B chain
(Non-covalent)
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.1:
14 residues within 4Å:
Chain A:
P.20
,
V.25
,
K.26
,
V.27
,
L.28
,
P.64
,
L.65
,
I.67
,
T.68
,
S.69
,
S.70
,
L.71
,
L.77
Ligands:
SO4.5
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:V.25
,
A:V.27
,
A:L.28
,
A:I.67
,
A:L.71
,
A:L.77
Hydrogen bonds:
A:V.25
,
A:V.27
,
A:V.27
,
A:P.64
,
A:I.67
,
A:I.67
,
A:S.69
,
A:L.71
,
A:L.71
Water bridges:
A:V.25
,
A:S.69
,
A:S.73
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.2:
15 residues within 4Å:
Chain B:
P.20
,
K.24
,
V.25
,
K.26
,
V.27
,
L.28
,
P.64
,
L.65
,
I.67
,
T.68
,
S.69
,
S.70
,
L.71
,
L.77
Ligands:
SO4.7
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:V.25
,
B:K.26
,
B:V.27
,
B:I.67
,
B:L.71
,
B:L.77
Hydrogen bonds:
B:V.25
,
B:V.25
,
B:V.27
,
B:P.64
,
B:I.67
,
B:S.69
,
B:L.71
,
B:L.71
Water bridges:
B:V.25
,
B:S.69
5 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.3:
5 residues within 4Å:
Chain A:
R.3
,
R.8
,
S.10
,
N.12
,
N.80
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:S.10
,
A:S.10
,
A:N.12
,
A:N.80
Salt bridges:
A:R.3
,
A:R.8
SO4.4:
4 residues within 4Å:
Chain A:
H.45
,
G.46
Chain B:
Y.56
,
R.57
2
PLIP interactions
:
1 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:G.46
,
B:R.57
SO4.5:
2 residues within 4Å:
Ligands:
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.1
,
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG-GLU.1
No protein-ligand interaction detected (PLIP)
SO4.6:
4 residues within 4Å:
Chain B:
R.3
,
R.8
,
S.10
,
N.12
5
PLIP interactions
:
5 interactions with chain B
Hydrogen bonds:
B:S.10
,
B:S.10
,
B:N.12
Salt bridges:
B:R.3
,
B:R.8
SO4.7:
3 residues within 4Å:
Ligands:
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG.2
,
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG.2
,
GLU-ARG-THR-ILE-PRO-ILE-THR-ARG.2
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hochberg, G.K. et al., The structured core domain of alpha B-crystallin can prevent amyloid fibrillation and associated toxicity. Proc.Natl.Acad.Sci.USA (2014)
Release Date
2014-04-09
Peptides
Alpha-crystallin B chain:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
E
B
G
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Secondary Structure
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Alpha-crystallin B chain
Related Entries With Identical Sequence
4m5t.1
|
4m5t.3
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
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Transparent
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