SMTL ID : 4m62.1 (3 other biounits)

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-oligomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.60, D.61, R.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.61, A:R.62 Water bridges: A:S.77, A:E.80 Salt bridges: A:R.62 SO4.2: 4 residues within 4Å: Chain A: R.46, P.60, R.62, F.63 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.46, A:R.46, A:R.46, A:R.62, A:R.62, A:E.80 Salt bridges: A:R.46, A:R.62 SO4.3: 4 residues within 4Å: Chain C: R.46, P.60, R.62, F.63 8 PLIP interactions: 8 interactions with chain C Water bridges: C:K.40, C:K.40, C:K.40, C:K.40, C:K.40, C:R.62 Salt bridges: C:R.46, C:R.62 SO4.4: 3 residues within 4Å: Chain E: R.9, R.10, H.11 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.10, E:H.11 Water bridges: E:R.10, E:R.10 Salt bridges: E:R.9, E:R.10 SO4.5: 2 residues within 4Å: Chain E: R.14, S.31 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:S.31, E:S.31 Water bridges: E:N.35 Salt bridges: E:R.14 SO4.6: 3 residues within 4Å: Chain F: R.9, R.10, H.11 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.10, F:H.11 Salt bridges: F:R.9, F:R.10, F:H.11 SO4.7: 3 residues within 4Å: Chain F: H.11, P.32, N.35 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:R.14, F:N.35 Water bridges: F:R.9 Salt bridges: F:H.11 SO4.8: 1 residues within 4Å: Chain F: K.27 4 PLIP interactions: 4 interactions with chain F Water bridges: F:K.27, F:K.27, F:D.45 Salt bridges: F:K.27 SO4.9: 1 residues within 4Å: Chain F: R.76 2 PLIP interactions: 2 interactions with chain F Water bridges: F:R.76 Salt bridges: F:R.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finton, K.A. et al., Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog. (2014)

Release Date

2014-10-08

Peptides

GEP2 FV light chain: AC
GEP2 FV heavy chain: BD
T117: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
M

B
H

D
I

E
S

F
T

GEP2 FV light chain

GEP2 FV heavy chain

T117

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