SMTL ID : 4m62.2 (3 other biounits)

Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-oligomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.9, R.10, H.11 Chain F: T.28, F.29, S.30 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:R.10, A:H.11, F:F.29, F:S.30 Water bridges: A:R.9, A:R.10, A:R.10, F:S.77 Salt bridges: A:R.9, A:R.10 SO4.2: 6 residues within 4Å: Chain A: R.14, S.31 Chain C: K.108, R.109, L.110, V.111 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:S.31, A:S.31, C:L.110, C:V.111, C:V.111 Water bridges: A:N.35 Salt bridges: A:R.14 SO4.3: 7 residues within 4Å: Chain B: R.9, R.10, H.11 Chain D: G.27, T.28, F.29, S.30 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:R.10, B:H.11, D:F.29, D:S.30 Salt bridges: B:R.9, B:R.10, B:H.11 SO4.4: 5 residues within 4Å: Chain B: H.11, P.32, N.35 Chain E: R.109, R.113 9 PLIP interactions: 5 interactions with chain B, 3 interactions with chain E, 1 interactions with chain D Hydrogen bonds: B:R.14, B:N.35 Water bridges: B:R.9, B:R.9, E:R.109, E:R.109, D:T.76 Salt bridges: B:H.11, E:R.109 SO4.5: 1 residues within 4Å: Chain B: K.27 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.27, B:K.27 Salt bridges: B:K.27 SO4.6: 1 residues within 4Å: Chain B: R.76 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.76 Salt bridges: B:R.76 SO4.7: 3 residues within 4Å: Chain C: P.60, D.61, R.62 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.61, C:R.62 Water bridges: C:S.77, C:E.80 Salt bridges: C:R.62 SO4.8: 4 residues within 4Å: Chain C: R.46, P.60, R.62, F.63 8 PLIP interactions: 8 interactions with chain C Water bridges: C:R.46, C:R.46, C:R.46, C:R.62, C:R.62, C:E.80 Salt bridges: C:R.46, C:R.62 SO4.9: 4 residues within 4Å: Chain E: R.46, P.60, R.62, F.63 8 PLIP interactions: 8 interactions with chain E Water bridges: E:K.40, E:K.40, E:K.40, E:K.40, E:K.40, E:R.62 Salt bridges: E:R.46, E:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finton, K.A. et al., Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog. (2014)

Release Date

2014-10-08

Peptides

T117: AB
GEP2 FV light chain: CE
GEP2 FV heavy chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
T

C
L

E
M

D
H

F
I

T117

GEP2 FV light chain

GEP2 FV heavy chain

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