SMTL ID : 4m81.1

The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans complexed with 1-fluoro-alpha-D-glucopyranoside (donor) and p-nitrophenyl beta-D-glucopyranoside (acceptor) at 1.86A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x GLF: alpha-D-glucopyranosyl fluoride(Non-covalent)

GLF.1: 12 residues within 4Å: Chain A: E.26, Y.28, H.134, N.145, N.190, E.191, Y.254, F.257, S.291, W.362, W.372 Ligands: PNW.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.26, A:Y.28, A:H.134, A:N.190, A:E.191, A:Y.254 Water bridges: A:N.145

1 x PNW: 4-nitrophenyl beta-D-glucopyranoside(Non-covalent)

PNW.2: 9 residues within 4Å: Chain A: F.143, N.145, E.191, L.193, P.195, F.228, Y.254, F.257 Ligands: GLF.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.143, A:L.193, A:F.228, A:F.228 Hydrogen bonds: A:N.145 Water bridges: A:D.144, A:D.144, A:L.303, A:L.303, A:N.304, A:R.311, A:R.311, A:R.311

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: W.245, N.246, V.247, H.285, W.286 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.246, A:V.247, A:W.286 Water bridges: A:S.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatani, Y. et al., Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase. Biochemistry (2014)

Release Date

2014-06-25

Peptides

EXO-1,3-BETA-GLUCANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXO-1,3-BETA-GLUCANASE

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