SMTL ID : 4m82.1

The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida albicans complexed with p-nitrophenyl-gentiobioside (product) at 1.6A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x NGB: 4-nitrophenyl 6-O-beta-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)

NGB.1: 14 residues within 4Å: Chain A: E.26, Y.28, F.143, N.145, E.191, L.193, P.195, F.228, H.252, Y.254, F.257, S.291, L.303, W.362 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.143, A:L.193, A:F.228 Hydrogen bonds: A:E.26, A:N.145, A:E.191, A:H.252, A:Y.254, A:S.291, A:S.291, A:L.303 Water bridges: A:E.26, A:D.144, A:F.228, A:L.303, A:N.304, A:N.304, A:R.311, A:R.311

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.2: 7 residues within 4Å: Chain A: V.240, W.245, N.246, V.247, S.284, H.285, W.286 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.246, A:V.247, A:V.247, A:S.284, A:W.286

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: L.329, D.330, I.331, N.368, A.369, P.370, T.376 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.329, A:I.331, A:T.376 Water bridges: A:A.369 EDO.4: 3 residues within 4Å: Chain A: G.110, V.112, Q.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.110, A:Q.113 Water bridges: A:A.98, A:G.110, A:Q.111, A:Q.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakatani, Y. et al., Major Change in Regiospecificity for the Exo-1,3-beta-glucanase from Candida albicans following Its Conversion to a Glycosynthase. Biochemistry (2014)

Release Date

2014-06-25

Peptides

EXO-1,3-BETA-GLUCANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXO-1,3-BETA-GLUCANASE

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