SMTL ID : 4m95.1

d(ATCCGTTATAACGGAT)complexed with Moloney Murine Leukemia virus reverse transcriptase catalytic fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x DA- DT- DC- DC- DG- DT- DT- DA: 5' d(ATCCGTTA) 3'(Non-covalent)

DA-DT-DC-DC-DG-DT-DT-DA.1: 12 residues within 4Å: Chain A: Y.45, L.80, R.97, K.101 Ligands: DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2, DT-DA-DA-DC-DG-DG-DA-DT.2 Protein-ligand interaction information (PLIP) not available

1 x DT- DA- DA- DC- DG- DG- DA- DT: 5' d(TAACGGAT) 3'(Non-covalent)

DT-DA-DA-DC-DG-DG-DA-DT.2: 14 residues within 4Å: Chain A: L.80, Q.94, D.95, L.96, R.97, G.172 Ligands: DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1, DA-DT-DC-DC-DG-DT-DT-DA.1 Protein-ligand interaction information (PLIP) not available

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: Q.44, M.47, R.52, E.152, W.153, R.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.152, A:R.154, A:R.154 EDO.4: 3 residues within 4Å: Chain A: N.100, K.101, K.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.174 Water bridges: A:K.34, A:N.100, A:D.105 EDO.5: 4 residues within 4Å: Chain A: G.66, R.140, T.167, R.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.168, A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, I. et al., The structure of an authentic spore photoproduct lesion in DNA suggests a basis for recognition. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-03-12

Peptides

Gag-Pol polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gag-Pol polyprotein

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