SMTL ID : 4xpc.1

Crystal structure of 5'- CTTATAAATTTATAAG in a host-guest complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x DC- DT- DT- DA- DT- DA- DA- DA: DNA (5'-D(*CP*TP*TP*AP*TP*AP*AP*A)-3')(Non-covalent)

DC-DT-DT-DA-DT-DA-DA-DA.1: 14 residues within 4Å: Chain A: Y.45, L.80, P.81, V.82, R.97, K.101 Ligands: DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2, DT-DT-DT-DA-DT-DA-DA-DG.2 Protein-ligand interaction information (PLIP) not available

1 x DT- DT- DT- DA- DT- DA- DA- DG: DNA (5'-D(P*TP*TP*TP*AP*TP*AP*AP*G)-3')(Non-covalent)

DT-DT-DT-DA-DT-DA-DA-DG.2: 15 residues within 4Å: Chain A: Y.45, L.80, Q.94, D.95, L.96, R.97, G.172 Ligands: DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1, DC-DT-DT-DA-DT-DA-DA-DA.1 Protein-ligand interaction information (PLIP) not available

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: W.75, T.144, P.147, L.148 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.144 EDO.4: 5 residues within 4Å: Chain A: L.22, G.66, R.140, T.167, R.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.167, A:T.167, A:R.168 EDO.5: 5 residues within 4Å: Chain A: D.134, A.135, F.136, F.137, Q.171 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.134, A:F.136, A:F.137, A:Q.171 Water bridges: A:D.134, A:A.135, A:A.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Georgiadis, M.M. et al., Structural basis for a six nucleotide genetic alphabet. J. Am. Chem. Soc. (2015)

Release Date

2015-05-27

Peptides

reverse transcriptase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

reverse transcriptase

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