SMTL ID : 4m9v.2 (2 other biounits)

Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain B: X.5 Chain C: H.27, A.30, H.31 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.30 Water bridges: C:H.27 MPD.6: 5 residues within 4Å: Chain C: R.7, P.8, F.10, G.15, T.17 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.10, C:F.10

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: G.5 Chain B: A.10, T.11 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-functional Binders)

CA.3: 2 residues within 4Å: Chain A: G.8 Chain B: G.6 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain C: C.39, E.41, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.39, C:C.42, C:H.55, C:H.59 ZN.5: 5 residues within 4Å: Chain C: C.11, C.14, K.16, H.27, H.31 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.11, C:C.14, C:H.27, C:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., DNA recognition of 5-carboxylcytosine by a zfp57 mutant at an atomic resolution of 0.97 angstrom. Biochemistry (2013)

Release Date

2013-11-27

Peptides

Zinc finger protein 57: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
F

Zinc finger protein 57

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