SMTL ID : 4m9v.3 (2 other biounits)

Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

homo-dimer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain B: X.5 Chain C: H.27, A.30, H.31 Chain F: A.30, H.31, L.32, G.33 Ligands: MPD.9 No protein-ligand interaction detected (PLIP) MPD.6: 5 residues within 4Å: Chain C: R.7, P.8, F.10, G.15, T.17 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.10, C:F.10 Water bridges: C:R.7 MPD.9: 9 residues within 4Å: Chain C: A.30, H.31, L.32, G.33 Chain E: X.5 Chain F: H.27, A.30, H.31 Ligands: MPD.1 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.30 Water bridges: F:H.27 MPD.14: 5 residues within 4Å: Chain F: R.7, P.8, F.10, G.15, T.17 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:F.10, F:F.10

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: G.5 Chain B: A.10, T.11 No protein-ligand interaction detected (PLIP) ACT.7: 3 residues within 4Å: Chain C: R.29, L.32, Y.34 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.34 ACT.8: 2 residues within 4Å: Chain C: V.58, H.59 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.58 Salt bridges: C:H.59 ACT.10: 3 residues within 4Å: Chain D: G.5 Chain E: A.10, T.11 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-functional Binders)

CA.3: 2 residues within 4Å: Chain A: G.8 Chain B: G.6 No protein-ligand interaction detected (PLIP) CA.11: 2 residues within 4Å: Chain D: G.8 Chain E: G.6 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain C: C.39, E.41, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.39, C:C.42, C:H.55, C:H.59 ZN.5: 6 residues within 4Å: Chain C: C.11, F.13, C.14, K.16, H.27, H.31 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.11, C:C.14, C:H.27, C:H.31 ZN.12: 5 residues within 4Å: Chain F: C.39, E.41, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.39, F:C.42, F:H.55, F:H.59 ZN.13: 5 residues within 4Å: Chain F: C.11, C.14, K.16, H.27, H.31 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.11, F:C.14, F:H.27, F:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., DNA recognition of 5-carboxylcytosine by a zfp57 mutant at an atomic resolution of 0.97 angstrom. Biochemistry (2013)

Release Date

2013-11-27

Peptides

Zinc finger protein 57: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

F
F

Zinc finger protein 57

Related Entries With Identical Sequence