SMTL ID : 4mae.1

Methanol dehydrogenase from Methylacidiphilum fumariolicum SolV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CE: CERIUM (III) ION(Non-covalent)

CE.1: 6 residues within 4Å: Chain A: E.172, N.256, D.299, D.301 Ligands: PQQ.2, 15P.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.172, A:E.172, A:D.299, A:D.301, A:D.301 CE.4: 6 residues within 4Å: Chain B: E.172, N.256, D.299, D.301 Ligands: PQQ.5, 15P.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.172, B:E.172, B:D.299, B:D.301, B:D.301

2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 23 residues within 4Å: Chain A: E.55, C.104, C.105, V.108, R.110, T.154, S.169, G.170, G.171, E.172, T.236, W.238, S.255, N.256, D.299, D.301, R.326, D.388, W.467, G.531, W.532 Ligands: CE.1, 15P.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.532 Hydrogen bonds: A:R.110, A:S.169, A:G.170, A:G.171, A:S.255, A:R.326, A:R.326, A:W.532 Water bridges: A:E.172, A:E.172 Salt bridges: A:R.110, A:R.110 pi-Stacking: A:W.238, A:W.238, A:W.238 PQQ.5: 23 residues within 4Å: Chain B: E.55, C.104, C.105, V.108, R.110, T.154, S.169, G.170, G.171, E.172, T.236, W.238, S.255, N.256, D.299, D.301, R.326, D.388, W.467, G.531, W.532 Ligands: CE.4, 15P.6 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:W.532 Hydrogen bonds: B:R.110, B:T.154, B:S.169, B:G.170, B:G.171, B:T.236, B:S.255, B:R.326, B:R.326, B:W.532 Water bridges: B:E.172, B:E.172 Salt bridges: B:R.110, B:R.110 pi-Stacking: B:W.238, B:W.238, B:W.238

2 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.3: 9 residues within 4Å: Chain A: C.104, C.105, E.172, W.260, D.299, W.532, L.550 Ligands: CE.1, PQQ.2 No protein-ligand interaction detected (PLIP) 15P.6: 8 residues within 4Å: Chain B: C.104, C.105, E.172, W.260, D.299, W.532 Ligands: CE.4, PQQ.5 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.172 Hydrogen bonds: B:D.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pol, A. et al., Rare earth metals are essential for methanotrophic life in volcanic mudpots. ENVIRON.MICROBIOL. (2014)

Release Date

2013-09-18

Peptides

Methanol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methanol dehydrogenase

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