SMTL ID : 4mdd.1

Crystal Structure of the Glucocorticoid Receptor Bound to a Non-steroidal Antagonist Reveals Repositioning and Partial Disordering of Activation Function Helix 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 29M: N-[2-{[benzyl(methyl)amino]methyl}-3-(4-fluoro-2-methoxyphenyl)-5-(propan-2-yl)-1H-indol-7-yl]methanesulfonamide(Non-covalent)

29M.1: 21 residues within 4Å: Chain A: M.41, L.44, N.45, L.47, G.48, Q.51, W.81, M.82, M.85, A.86, L.89, F.104, M.115, M.120, M.127, L.214, Y.216, C.217, F.218, T.220, F.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.44, A:L.44, A:W.81, A:L.214, A:Y.216, A:F.221 Hydrogen bonds: A:M.41, A:N.45, A:N.45 pi-Stacking: A:F.104 29M.2: 20 residues within 4Å: Chain B: M.41, L.44, N.45, L.47, G.48, Q.51, W.81, M.82, M.85, A.86, L.89, F.104, M.120, M.127, L.213, Y.216, C.217, F.218, T.220, F.221 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.44, B:W.81, B:F.104, B:L.213, B:Y.216, B:F.221 Hydrogen bonds: B:M.41, B:N.45, B:N.45, B:G.48 pi-Stacking: B:F.104, B:F.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luz, J.G. et al., Crystal Structure of the Glucocorticoid Receptor Bound to a Non-steroidal Antagonist Reveals Repositioning and Partial Disordering of Activation Function Helix 12. To be Published

Release Date

2014-12-03

Peptides

Glucocorticoid receptor: AB
Nuclear receptor corepressor 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glucocorticoid receptor

Nuclear receptor corepressor 1

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