SMTL ID : 4mgd.1

Crystal structure of hERa-LBD (Y537S) in complex with HPTE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 27N: 4,4'-(2,2,2-trichloroethane-1,1-diyl)diphenol(Non-covalent)

27N.1: 11 residues within 4Å: Chain A: L.49, T.50, A.53, E.56, L.90, R.97, F.107, M.124, L.131, L.239, L.243 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:A.53, A:L.90 Hydrogen bonds: A:E.56, A:R.97 Water bridges: A:L.94 pi-Stacking: A:F.107 27N.2: 12 residues within 4Å: Chain B: M.46, L.49, T.50, A.53, E.56, L.90, R.97, F.107, M.124, L.131, L.228, L.243 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:L.90, B:L.228 Hydrogen bonds: B:L.90, B:R.97 Water bridges: B:L.94 pi-Stacking: B:F.107

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: E.26, W.96, G.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.26, B:E.26 Water bridges: B:G.145

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain B: D.35, S.44, L.48 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.35 Water bridges: B:S.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delfosse, V. et al., Structural and functional profiling of environmental ligands for estrogen receptors. Environ.Health Perspect. (2014)

Release Date

2014-09-03

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

D
G

Estrogen receptor

Nuclear receptor coactivator 1

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