SMTL ID : 4mik.1

Crystal Structure of hPNMT in Complex with bisubstrate inhibitor (2R,3R,4S,5S)-2-(6-amino-9H-purin-9-yl)-5-(((2-(((7-nitro-1,2,3,4-tetrahydroisoquinolin-3-yl)methyl)amino)ethyl)thio)methyl)tetrahydrofuran-3,4-diol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x JIL: 9-{5-S-[2-({[(3S)-7-nitro-1,2,3,4-tetrahydroisoquinolin-3-yl]methyl}amino)ethyl]-5-thio-alpha-L-lyxofuranosyl}-9H-purin-6-amine(Non-covalent)

JIL.1: 32 residues within 4Å: Chain A: Y.27, F.30, Y.35, N.39, Y.40, R.44, V.53, K.57, G.79, G.81, P.82, D.101, F.102, L.103, N.106, I.157, D.158, V.159, H.160, F.182, C.183, A.186, V.187, A.216, E.219, Y.222, V.231, M.258, D.267, V.269, V.272 Ligands: TRS.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.35 Hydrogen bonds: A:N.106, A:D.158, A:V.159, A:E.219 Water bridges: A:R.44, A:A.216 pi-Stacking: A:Y.27, A:F.182 JIL.3: 34 residues within 4Å: Chain B: V.23, Y.27, F.30, Y.35, N.39, Y.40, R.44, V.53, K.57, G.79, G.81, P.82, D.101, F.102, L.103, N.106, I.157, D.158, V.159, H.160, A.181, F.182, C.183, A.186, V.187, A.216, E.219, Y.222, V.231, M.258, D.267, V.269, V.272 Ligands: TRS.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.35, B:N.39, B:Y.222 Hydrogen bonds: B:D.101, B:L.103, B:N.106, B:D.158, B:V.159, B:E.219 Water bridges: B:R.44, B:A.216 pi-Stacking: B:Y.27, B:F.182

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 14 residues within 4Å: Chain A: Y.35, Y.40, I.78, G.79, S.80, G.81, P.82, T.83, Y.85, Q.86, A.181, F.182, C.183 Ligands: JIL.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.35, A:Y.35, A:Y.40, A:A.181 Water bridges: A:G.79, A:A.181 TRS.4: 14 residues within 4Å: Chain B: Y.35, Y.40, K.57, I.78, G.79, S.80, G.81, P.82, T.83, Y.85, Q.86, A.181, F.182 Ligands: JIL.3 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.35, B:Y.40, B:G.79, B:G.79, B:A.181 Water bridges: B:Q.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bart, A.G. et al., To be published. To be Published

Release Date

2014-09-10

Peptides

Phenylethanolamine N-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenylethanolamine N-methyltransferase

Related Entries With Identical Sequence