SMTL ID : 4mq4.1

Crystal Structure of hPNMT in Complex with bisubstrate inhibitor N-(3-((((2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl)thio)propyl)-1,2,3,4-tetrahydroisoquinoline-3-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 2D5: 5'-S-(3-{[(3R)-1,2,3,4-tetrahydroisoquinolin-3-ylcarbonyl]amino}propyl)-5'-thioadenosine(Non-covalent)

2D5.1: 32 residues within 4Å: Chain A: V.23, Y.27, F.30, Y.35, N.39, Y.40, R.44, V.53, K.57, G.79, G.81, P.82, D.101, F.102, L.103, N.106, I.157, D.158, V.159, H.160, F.182, C.183, A.186, V.187, A.216, E.219, Y.222, M.258, D.267, V.269, V.272 Ligands: TRS.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.53, A:F.182, A:F.182, A:F.182, A:A.186, A:Y.222 Hydrogen bonds: A:Y.35, A:D.101, A:D.101, A:L.103, A:N.106, A:D.158, A:V.159, A:E.219 Water bridges: A:R.44 pi-Stacking: A:Y.27 2D5.3: 32 residues within 4Å: Chain B: Y.27, F.30, Y.35, N.39, Y.40, R.44, V.53, K.57, I.78, G.79, G.81, P.82, D.101, F.102, L.103, N.106, I.157, D.158, V.159, H.160, F.182, C.183, A.186, V.187, A.216, E.219, Y.222, M.258, D.267, V.269, V.272 Ligands: TRS.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.35, B:F.182, B:Y.222 Hydrogen bonds: B:D.101, B:N.106, B:D.158, B:D.158, B:V.159, B:D.267 Water bridges: B:N.39, B:H.160 pi-Stacking: B:Y.27, B:F.182

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 13 residues within 4Å: Chain A: Y.35, Y.40, G.79, S.80, G.81, P.82, T.83, Y.85, Q.86, A.181, F.182, C.183 Ligands: 2D5.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.35, A:Y.40, A:G.79, A:T.83, A:Y.85, A:A.181 Water bridges: A:A.181 TRS.4: 13 residues within 4Å: Chain B: Y.35, Y.40, G.79, S.80, G.81, P.82, T.83, Y.85, Q.86, A.181, F.182, C.183 Ligands: 2D5.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.40, B:Y.40, B:G.79, B:T.83, B:Y.85, B:A.181, B:A.181 Water bridges: B:Q.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bart, A.G. et al., To be Published. To be Published

Release Date

2014-10-15

Peptides

Phenylethanolamine N-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenylethanolamine N-methyltransferase

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