SMTL ID : 4mjq.1

E. coli sliding clamp in complex with Bromfenac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

1 x 27R: [2-amino-3-(4-bromobenzoyl)phenyl]acetic acid(Non-covalent)

27R.1: 9 residues within 4Å: Chain A: R.152, Y.154, T.172, G.174, H.175, R.176, P.242, V.247, V.360 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.242, A:V.247, A:V.247 Hydrogen bonds: A:Y.154 Water bridges: A:D.243 Halogen bonds: A:V.360

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 4 residues within 4Å: Chain A: D.121, W.122, S.124, R.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.224, A:R.224 Water bridges: A:Q.217 PGE.7: 5 residues within 4Å: Chain A: Q.265 Chain B: R.7, R.80, L.82, E.84 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:Q.265 Hydrogen bonds: B:R.7, B:R.7

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: S.181, Q.355, S.356 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain A: G.19, G.46, T.47 No protein-ligand interaction detected (PLIP) CA.8: 3 residues within 4Å: Chain B: S.181, Q.355, S.356 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.105 Chain B: E.303 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: H.175, R.176, L.177, V.247, V.360 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 1 residues within 4Å: Chain A: R.105 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.105

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.9: 5 residues within 4Å: Chain A: E.301, E.303 Chain B: R.96, R.105, S.107 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.96, B:R.105, B:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs. Chem.Biol. (2014)

Release Date

2013-09-18

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III subunit beta

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