SMTL ID : 4mn3.1

Chromodomain antagonists that target the polycomb-group methyllysine reader protein Chromobox homolog 7 (CBX7)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x ACE- PHE- ALA- TYR- M3L- SER- NH2: peptide(Non-covalent)

ACE-PHE-ALA-TYR-M3L-SER-NH2.1: 16 residues within 4Å: Chain A: E.2, Q.3, V.4, F.5, A.6, V.7, W.26, W.29, Y.33, E.37, H.41, I.42, L.43, D.44, L.47 Ligands: EDO.4 Protein-ligand interaction information (PLIP) not available

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.25, W.29, P.30, P.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.25 EDO.3: 2 residues within 4Å: Chain A: M.49, E.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.52 EDO.4: 3 residues within 4Å: Chain A: A.6, K.27 Ligands: ACE-PHE-ALA-TYR-M3L-SER-NH2.1 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: E.2, H.41 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.2, A:H.41

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.6: 5 residues within 4Å: Chain A: K.13, V.15, V.20, E.52, E.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.13, A:E.52, A:E.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simhadri, C. et al., Chromodomain Antagonists That Target the Polycomb-Group Methyllysine Reader Protein Chromobox Homolog 7 (CBX7). J.Med.Chem. (2014)

Release Date

2014-04-02

Peptides

Chromobox protein homolog 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chromobox protein homolog 7

Related Entries With Identical Sequence