SMTL ID : 5epj.1

Crystal Structure of chromodomain of CBX7 in complex with inhibitor UNC3866

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 5R0- PHE- ALA- LEU- ELY- 5R5: peptide-like inhibitor UNC3866(Non-covalent)

5R0-PHE-ALA-LEU-ELY-5R5.1: 15 residues within 4Å: Chain A: Q.3, V.4, F.5, A.6, V.7, W.26, W.29, T.35, E.37, H.41, L.43, D.44, R.46, L.47 Ligands: UNX.11 9 PLIP interactions: 8 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:D.44, A:R.46, A:L.47, A:L.47, F.0, A:F.5, A:F.5, A:W.26, A:W.26, A:W.29, A:W.29 Hydrogen bonds: A:V.7, A:E.37, A:Q.3 pi-Cation interactions: A:F.5

13 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: R.14, R.16 No protein-ligand interaction detected (PLIP) UNX.3: 4 residues within 4Å: Chain A: K.19, V.20, E.21, P.38 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: V.4 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: E.39, E.40, I.42 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain A: I.42, L.43, D.44, P.45 Ligands: UNX.5 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain A: L.43 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: K.12, K.13, Y.51 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: R.14, V.15 No protein-ligand interaction detected (PLIP) UNX.10: 1 residues within 4Å: Chain A: R.11 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain A: R.46 Ligands: 5R0-PHE-ALA-LEU-ELY-5R5.1 No protein-ligand interaction detected (PLIP) UNX.12: 1 residues within 4Å: Chain A: Y.33 No protein-ligand interaction detected (PLIP) UNX.13: 3 residues within 4Å: Chain A: P.38, E.39, E.40 No protein-ligand interaction detected (PLIP) UNX.14: 1 residues within 4Å: Chain A: E.53 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal Structure of chromodomain of CBX7 in complex with inhibitor UNC3866. to be published

Release Date

2015-12-16

Peptides

Chromobox protein homolog 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chromobox protein homolog 7

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