SMTL ID : 4mr6.1

Crystal Structure of the second bromodomain of human BRD2 in complex with a quinazolinone ligand (RVX-208)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Y.27, M.97, K.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.100 EDO.2: 4 residues within 4Å: Chain A: Q.102, D.103, E.106, F.107 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.102, A:D.103 EDO.3: 2 residues within 4Å: Chain A: K.10, N.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.13

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: W.29, P.30, H.92, V.94, M.97 Ligands: 1K0.5 No protein-ligand interaction detected (PLIP)

1 x 1K0: 2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one(Non-covalent)

1K0.5: 11 residues within 4Å: Chain A: W.29, P.30, F.31, V.35, L.40, L.42, N.88, P.89, H.92, V.94 Ligands: DMS.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.30, A:V.35, A:L.40, A:L.42, A:L.42, A:V.94 Hydrogen bonds: A:N.88, A:N.88 pi-Cation interactions: A:H.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picaud, S. et al., RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-27

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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