SMTL ID : 4mtr.1

Zn-bound GloA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: L.29, G.45, Y.46, Q.47, D.48, E.49, A.52, A.53, A.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.46, A:Q.47, A:D.48 EDO.2: 2 residues within 4Å: Chain A: R.30, R.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.31 EDO.5: 1 residues within 4Å: Chain B: E.36 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.35 EDO.6: 9 residues within 4Å: Chain A: I.3, S.6, L.75 Chain B: I.3, H.5, S.6, A.53, A.54, L.75 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.6, B:A.54

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.5, E.56 Chain B: H.74, E.122 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.74, B:E.122, A:H.5, A:E.56, H2O.1 ZN.4: 4 residues within 4Å: Chain A: H.74, E.122 Chain B: H.5, E.56 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.5, B:E.56, A:H.74, A:E.122, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bythell-Douglas, R. et al., The crystal structure of a homodimeric Pseudomonas glyoxalase I enzyme reveals asymmetric metallation commensurate with half-of-sites activity. Chemistry (2015)

Release Date

2014-09-24

Peptides

Lactoylglutathione lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoylglutathione lyase

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