SMTL ID : 4mts.1

Ni- and Zn-bound GloA2 at high resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: H.74, M.103, E.122 Chain B: H.5, L.41, E.56 Ligands: NI.3 No protein-ligand interaction detected (PLIP) GOL.2: 3 residues within 4Å: Chain A: R.32, D.33, Y.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.33 GOL.6: 4 residues within 4Å: Chain B: R.9, F.39, T.58, N.60 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.9, B:R.9, B:N.60 Water bridges: B:G.37, B:T.58, B:N.60

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 5 residues within 4Å: Chain A: H.74, E.122 Chain B: H.5, E.56 Ligands: GOL.1 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.5, B:E.56, A:H.74, A:E.122

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.5, E.56 Chain B: H.74, E.122 Ligands: ZN.5 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.5, A:E.56, B:H.74, B:E.122, H2O.1 ZN.5: 3 residues within 4Å: Chain B: H.105, E.122 Ligands: ZN.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.105, B:E.122, H2O.1, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bythell-Douglas, R. et al., The crystal structure of a homodimeric Pseudomonas glyoxalase I enzyme reveals asymmetric metallation commensurate with half-of-sites activity. Chemistry (2015)

Release Date

2014-09-24

Peptides

Lactoylglutathione lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoylglutathione lyase

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