- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x EOH: ETHANOL(Non-functional Binders)
- 4 x 2DZ: [5-methoxy-2-({[2-nitro-4-(trifluoromethyl)phenyl]sulfonyl}carbamoyl)-1H-indol-1-yl]acetic acid(Non-covalent)
2DZ.3: 23 residues within 4Å:- Chain A: P.38, T.39, M.40, H.44, G.46, H.47, L.50, Q.72, Y.82, H.135, G.158, K.160, D.161, Q.164, V.184, P.185, T.186, V.187, M.195, S.196, S.197
- Ligands: 2DZ.5, GOL.8
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:M.40, A:Q.164, A:V.187, A:S.197
- Water bridges: A:G.158, A:K.160, A:K.160, A:S.197
- Salt bridges: A:H.44, A:K.160
- pi-Stacking: A:H.44, A:H.44
- Halogen bonds: A:D.161
2DZ.4: 9 residues within 4Å:- Chain A: M.71, L.114, T.117, P.133, T.134, A.137, G.138, T.141
- Ligands: GOL.7
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.114, A:T.117, A:P.133, A:T.134
- Halogen bonds: A:T.134, A:T.141
2DZ.5: 15 residues within 4Å:- Chain A: Q.72, F.73, D.78, A.81, Y.82, P.83, E.128, P.131, R.132, H.135, S.197, R.198, Y.201, R.278
- Ligands: 2DZ.3
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:Y.82, A:R.132, A:R.198
- Hydrogen bonds: A:D.78, A:R.132, A:R.132
- Water bridges: A:Q.72, A:Q.72, A:H.135, A:H.135
- Salt bridges: A:R.132
- pi-Cation interactions: A:R.132
2DZ.13: 20 residues within 4Å:- Chain B: P.38, T.39, M.40, H.44, G.46, H.47, L.50, V.139, V.142, V.143, F.157, K.160, Q.164, V.184, P.185, T.186, V.187, M.195, S.196, S.197
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:K.160
- Hydrogen bonds: B:M.40, B:V.187, B:S.196, B:S.197
- Water bridges: B:P.38, B:K.160, B:D.161
- Salt bridges: B:H.44
- pi-Stacking: B:H.44, B:H.44
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 8 residues within 4Å:- Chain A: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.115, A:K.145, A:K.145
EDO.9: 2 residues within 4Å:- Chain A: P.111, D.112
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.112, A:D.112
EDO.11: 6 residues within 4Å:- Chain A: L.147, Q.148, R.151, L.177, D.178, V.179
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.151, A:D.178
EDO.14: 8 residues within 4Å:- Chain B: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.115, B:K.145, B:K.145
EDO.15: 1 residues within 4Å:- Chain B: L.48
2 PLIP interactions:2 interactions with chain B- Water bridges: B:E.45, B:Q.92
EDO.16: 5 residues within 4Å:- Chain B: L.147, Q.148, L.177, D.178, V.179
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.148, B:D.178
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 4 residues within 4Å:- Chain A: L.114, R.115, T.117
- Ligands: 2DZ.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.114, A:T.117, A:T.117
GOL.8: 7 residues within 4Å:- Chain A: P.38, M.40, Q.72, V.142, V.143, Q.164
- Ligands: 2DZ.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.72, A:Q.164
- Water bridges: A:F.67
GOL.12: 7 residues within 4Å:- Chain A: A.21, S.24, R.25, Q.148, I.149, V.150, R.151
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.25, A:I.149
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Optimization of Inhibitors of Mycobacterium tuberculosis Pantothenate Synthetase Based on Group Efficiency Analysis. Chemmedchem (2016)
- Release Date
- 2014-08-27
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x EOH: ETHANOL(Non-functional Binders)
- 4 x 2DZ: [5-methoxy-2-({[2-nitro-4-(trifluoromethyl)phenyl]sulfonyl}carbamoyl)-1H-indol-1-yl]acetic acid(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Optimization of Inhibitors of Mycobacterium tuberculosis Pantothenate Synthetase Based on Group Efficiency Analysis. Chemmedchem (2016)
- Release Date
- 2014-08-27
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B