- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.64 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: F.44, E.45, N.46, M.47
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.45, A:N.46, A:N.46, A:M.47
SO4.4: 7 residues within 4Å:- Chain A: K.69, L.167, E.168, G.169, H.170, N.171, S.174
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:L.167, A:G.169, A:H.170, A:N.171
- Salt bridges: A:K.69
SO4.5: 7 residues within 4Å:- Chain A: V.84, P.85, R.130, G.131, F.132, E.257, A.260
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.257
SO4.6: 8 residues within 4Å:- Chain A: L.109, L.218, N.219, R.224
- Chain B: L.109, L.218, N.219, R.224
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Salt bridges: B:R.224, A:R.224
- Hydrogen bonds: A:L.218
SO4.7: 2 residues within 4Å:- Chain A: R.82, R.83
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.82, A:R.83
- Salt bridges: A:R.83
SO4.8: 3 residues within 4Å:- Chain A: S.149, T.150, Q.155
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.149, A:T.150, A:Q.155
SO4.9: 4 residues within 4Å:- Chain A: N.80, Q.160, S.163, I.164
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.80, A:S.163
SO4.10: 5 residues within 4Å:- Chain A: R.58, Q.104, H.107
- Chain B: T.213, G.214
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.107
SO4.15: 3 residues within 4Å:- Chain B: R.82, R.130, H.142
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.82, B:R.130
SO4.16: 2 residues within 4Å:- Chain B: R.82, R.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.83
SO4.17: 4 residues within 4Å:- Chain B: K.266, G.269, I.270, Q.271
No protein-ligand interaction detected (PLIP)SO4.18: 5 residues within 4Å:- Chain B: K.69, E.168, G.169, H.170, N.171
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.169, B:N.171
- Salt bridges: B:K.69
SO4.19: 4 residues within 4Å:- Chain A: N.217, N.219
- Chain B: T.111, D.112
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.112, B:D.112, A:N.217
- Water bridges: B:L.113, B:L.113
SO4.20: 4 residues within 4Å:- Chain B: N.80, Q.160, S.163, I.164
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.80, B:N.80, B:Q.160, B:S.163, B:S.163
SO4.21: 7 residues within 4Å:- Chain B: V.84, P.85, R.130, G.131, F.132, E.257, A.260
No protein-ligand interaction detected (PLIP)- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 2F4: 2-{4-[(6,7-difluoro-1H-benzimidazol-2-yl)amino]phenoxy}-N-methyl-3,4'-bipyridin-2'-amine(Non-covalent)
2F4.12: 16 residues within 4Å:- Chain A: Y.86, H.87, L.197, S.239, V.240, I.254, Y.255, F.258, P.274, M.275, K.280, E.283, V.284, G.287, Q.288, F.291
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:Y.86, A:V.240, A:I.254, A:F.258, A:V.284, A:F.291, A:F.291
- Hydrogen bonds: A:G.287, A:Q.288
- pi-Stacking: A:F.258, A:F.291
- Halogen bonds: A:E.283
2F4.22: 17 residues within 4Å:- Chain B: Y.86, H.87, L.197, L.237, S.239, V.240, I.254, Y.255, F.258, P.274, M.275, K.280, E.283, V.284, G.287, Q.288, F.291
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:Y.86, B:L.237, B:V.240, B:I.254, B:F.258, B:V.284, B:F.291
- Hydrogen bonds: B:Y.255, B:G.287, B:Q.288
- pi-Stacking: B:F.258, B:F.291, B:F.291
- Halogen bonds: B:E.283
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, E. et al., Design, Optimization, and Biological Evaluation of Novel Keto-Benzimidazoles as Potent and Selective Inhibitors of Phosphodiesterase 10A (PDE10A). J.Med.Chem. (2013)
- Release Date
- 2013-10-23
- Peptides
- cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.64 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 2F4: 2-{4-[(6,7-difluoro-1H-benzimidazol-2-yl)amino]phenoxy}-N-methyl-3,4'-bipyridin-2'-amine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, E. et al., Design, Optimization, and Biological Evaluation of Novel Keto-Benzimidazoles as Potent and Selective Inhibitors of Phosphodiesterase 10A (PDE10A). J.Med.Chem. (2013)
- Release Date
- 2013-10-23
- Peptides
- cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B