SMTL ID : 4mvb.1

42F3 pCPB7/H-2Ld Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLN- PRO- ALA- GLU- GLY- GLY- PHE- GLN- LEU: pCPB7(Non-covalent)

GLN-PRO-ALA-GLU-GLY-GLY-PHE-GLN-LEU.1: 29 residues within 4Å: Chain B: N.32, Y.33, S.96, D.97, A.98, P.99 Chain C: Y.8, E.10, I.64, I.67, G.70, Q.71, W.74, V.77, N.78, T.81, L.82, Y.85, W.98, Y.100, Y.124, T.144, W.148, A.153, Y.156, Y.157, Y.160, W.168, Y.172 27 PLIP interactions: 5 interactions with chain B, 22 interactions with chain C Hydrophobic interactions: B:A.98, B:P.99, C:I.64, C:V.77, C:L.82, C:Y.100, C:Y.124, C:T.144, C:A.153, C:Y.156, C:Y.156, C:Y.160, C:W.168 Hydrogen bonds: B:N.32, B:S.96, B:D.97, C:Y.8, C:Q.71, C:Q.71, C:Q.71, C:N.78, C:N.78, C:Y.100, C:Y.100, C:Y.157, C:Y.160, C:Y.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, J.J. et al., Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity. Nat. Immunol. (2016)

Release Date

2015-08-19

Peptides

42F3 alpha VmCh: A
42F3 beta VmCh: B
H-2 class I histocompatibility antigen, L-D alpha chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

42F3 alpha VmCh

42F3 beta VmCh

H-2 class I histocompatibility antigen, L-D alpha chain

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