SMTL ID : 4mzq.1 (1 other biounit)

beta-Alanyl-CoA:Ammonia Lyase from Clostridium propionicum in complex with propionyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-hexamer

Ligands

6 x 1VU: propionyl Coenzyme A(Non-covalent)

1VU.1: 16 residues within 4Å: Chain A: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121, F.123 Chain F: V.24, G.26, E.58, F.59, T.60, A.61, P.62 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain F Hydrophobic interactions: A:L.52, A:F.123, A:F.123 Hydrogen bonds: A:F.51, A:F.51, A:N.80, A:N.80, A:Q.81, A:S.82, F:E.58, F:F.59 Water bridges: A:Q.81, A:Q.81, A:S.82, A:S.82, A:S.121, F:A.61, F:V.63 1VU.2: 16 residues within 4Å: Chain B: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121, F.123 Chain E: V.24, G.26, E.58, F.59, T.60, A.61, P.62 20 PLIP interactions: 15 interactions with chain B, 5 interactions with chain E Hydrophobic interactions: B:L.52, B:F.123, B:F.123 Hydrogen bonds: B:F.51, B:F.51, B:N.80, B:Q.81, B:S.82, B:S.121, E:E.58, E:E.58, E:F.59 Water bridges: B:Y.54, B:N.80, B:Q.81, B:Q.81, B:S.82, B:S.82, E:A.61, E:V.63 1VU.3: 16 residues within 4Å: Chain C: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121, F.123 Chain D: V.24, G.26, E.58, F.59, T.60, A.61, P.62 18 PLIP interactions: 13 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:L.52, C:F.123 Hydrogen bonds: C:F.51, C:F.51, C:N.80, C:Q.81, C:S.82, D:E.58, D:E.58, D:F.59 Water bridges: C:Y.54, C:N.80, C:N.80, C:N.80, C:N.80, C:S.82, D:A.61, D:V.63 1VU.4: 16 residues within 4Å: Chain C: Y.19, V.24, G.26, E.58, F.59, T.60, A.61, P.62 Chain D: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121 18 PLIP interactions: 12 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:L.50, D:L.52 Hydrogen bonds: D:F.51, D:F.51, D:N.80, D:N.80, D:Q.81, D:S.82, C:E.58, C:E.58, C:F.59 Water bridges: D:Y.54, D:S.82, D:S.82, D:S.82, C:F.59, C:A.61, C:V.63 1VU.5: 16 residues within 4Å: Chain B: V.24, G.26, E.58, F.59, T.60, A.61, P.62 Chain E: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121, F.123 17 PLIP interactions: 12 interactions with chain E, 5 interactions with chain B Hydrophobic interactions: E:L.50, E:L.52, E:F.123 Hydrogen bonds: E:F.51, E:F.51, E:N.80, E:Q.81, E:S.82, B:E.58, B:F.59 Water bridges: E:Y.54, E:N.80, E:Q.81, E:S.82, B:F.59, B:A.61, B:V.63 1VU.6: 16 residues within 4Å: Chain A: V.24, G.26, E.58, F.59, T.60, A.61, P.62 Chain F: L.50, F.51, L.52, G.79, N.80, Q.81, S.82, S.121, F.123 20 PLIP interactions: 5 interactions with chain A, 15 interactions with chain F Hydrogen bonds: A:E.58, A:E.58, A:F.59, F:F.51, F:F.51, F:N.80, F:N.80, F:Q.81, F:S.82 Water bridges: A:A.61, A:V.63, F:Y.54, F:Q.81, F:S.82, F:S.82, F:S.82, F:S.82 Hydrophobic interactions: F:L.50, F:L.52, F:F.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heine, A. et al., High resolution crystal structure of Clostridium propionicum beta-alanyl-CoA:ammonia lyase, a new member of the "hot dog fold" protein superfamily. Proteins (2014)

Release Date

2014-03-26

Peptides

beta-Alanyl-CoA:Ammonia Lyase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

beta-Alanyl-CoA:Ammonia Lyase

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