SMTL ID : 4n36.3 (5 other biounits)

Structure of langerin CRD I313 D288 complexed with Me-GlcNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 2F8: methyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside(Non-covalent)

2F8.1: 7 residues within 4Å: Chain A: E.93, N.95, E.101, K.107, N.115, D.116 Ligands: CA.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.93, A:N.95, A:E.101, A:N.115 Water bridges: A:E.101, A:K.107, A:K.107, A:K.107 Salt bridges: A:K.107

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.115, D.116 Ligands: 2F8.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.116, A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Common polymorphisms in human langerin change specificity for glycan ligands. J.Biol.Chem. (2013)

Release Date

2013-11-20

Peptides

C-type lectin domain family 4 member K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C-type lectin domain family 4 member K

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