SMTL ID : 4n37.5 (5 other biounits)

Structure of langerin CRD I313 D288 complexed with Me-Man

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)

MMA.1: 7 residues within 4Å: Chain A: E.93, N.95, E.101, K.107, N.115, D.116 Ligands: CA.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.95, A:E.101, A:N.115, A:N.115 Water bridges: A:K.107 Salt bridges: A:K.107 MMA.3: 7 residues within 4Å: Chain B: E.93, N.95, E.101, K.107, N.115, D.116 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.95, B:E.101, B:N.115, B:N.115 Salt bridges: B:K.107

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.115, D.116 Ligands: MMA.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.116, A:D.116 CA.4: 6 residues within 4Å: Chain B: E.93, N.95, E.101, N.115, D.116 Ligands: MMA.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.93, B:E.101, B:D.116, B:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Common polymorphisms in human langerin change specificity for glycan ligands. J.Biol.Chem. (2013)

Release Date

2013-11-20

Peptides

C-type lectin domain family 4 member K: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C-type lectin domain family 4 member K

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