SMTL ID : 4n5g.1

Crystal Structure of RXRa LBD complexed with a synthetic modulator K8012

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-tetramer

Ligands

2 x K09: 5-(2-{(1Z)-5-fluoro-2-methyl-1-[4-(propan-2-yl)benzylidene]-1H-inden-3-yl}ethyl)-1H-tetrazole(Non-covalent)

K09.1: 13 residues within 4Å: Chain A: I.50, A.54, W.87, L.112, C.214, L.215, L.218, F.219, F.220, F.221, I.224, G.225 Chain C: L.218 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.50, A:A.54, A:W.87, A:L.112, A:F.220, A:F.220, A:F.221, A:I.224, A:I.224, C:L.218 Hydrogen bonds: A:L.218, A:F.219, A:F.220, A:F.221 K09.2: 12 residues within 4Å: Chain D: I.50, Q.57, W.87, L.91, C.214, L.215, L.218, F.219, F.220, F.221, I.224, G.225 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:I.50, D:W.87, D:L.91, D:L.218, D:F.220, D:F.220, D:F.221, D:I.224, D:I.224 Hydrogen bonds: D:L.218, D:F.219, D:F.220, D:F.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Sulindac-Derived RXR alpha Modulators Inhibit Cancer Cell Growth by Binding to a Novel Site. Chem.Biol. (2014)

Release Date

2014-05-14

Peptides

Retinoic acid receptor RXR-alpha: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Retinoic acid receptor RXR-alpha

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