SMTL ID : 7nke.1

Crystal structure of human RXRalpha ligand binding domain in complex with 2,4-di-tert-butylphenol and a coactivator fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-mer

Ligands

2 x UGW: 2,4-di~{tert}-butylphenol(Non-covalent)

UGW.1: 7 residues within 4Å: Chain A: I.50, A.54, I.92, F.95, V.131, C.214, L.218 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.50, A:A.54, A:V.131 UGW.2: 11 residues within 4Å: Chain C: I.50, A.54, N.88, L.91, I.92, F.95, I.106, L.108, V.131, C.214, L.218 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:I.50, C:A.54, C:N.88, C:L.91, C:I.106, C:L.108, C:V.131

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain C: V.24, Q.57, T.60, L.61, W.64, S.94, R.153 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.57, C:S.94, C:R.153, C:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, X.M. et al., 2,4-Di-tert-butylphenol Induces Adipogenesis in Human Mesenchymal Stem Cells by Activating Retinoid X Receptors. Endocrinology (2023)

Release Date

2022-03-02

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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