SMTL ID : 4naw.3 (3 other biounits)

Crystal Structure of Human ATG12~ATG5-ATG16N in complex with a fragment of ATG3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-oligomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: R.161, Q.164 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.161 SO4.2: 3 residues within 4Å: Chain B: S.93, S.94, A.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.95 SO4.3: 3 residues within 4Å: Chain B: K.138, R.183, R.204 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:K.138, B:R.183, B:R.204 SO4.4: 4 residues within 4Å: Chain B: R.161, F.162, D.163, Q.164 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.161, B:F.162, B:D.163, B:Q.164 Salt bridges: B:R.161

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain B: A.95, L.96, P.97, N.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.97 Water bridges: B:N.99, B:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metlagel, Z. et al., Structural basis of ATG3 recognition by the autophagic ubiquitin-like protein ATG12. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-06

Peptides

Ubiquitin-like protein ATG12: A
Autophagy protein 5: B
Autophagy-related protein 16-1: C
Ubiquitin-like-conjugating enzyme ATG3: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

Ubiquitin-like protein ATG12

Autophagy protein 5

Autophagy-related protein 16-1

Ubiquitin-like-conjugating enzyme ATG3

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