SMTL ID : 4naw.4 (3 other biounits)

Crystal Structure of Human ATG12~ATG5-ATG16N in complex with a fragment of ATG3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: K.51 Chain C: N.33 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Water bridges: B:Y.35, B:K.51, B:K.51, B:K.51, C:N.33 Salt bridges: B:K.51 SO4.2: 3 residues within 4Å: Chain B: K.138, R.183, R.204 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:K.138, B:R.183, B:R.204 SO4.3: 3 residues within 4Å: Chain B: R.161, D.163, Q.164 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.163, B:Q.164 Salt bridges: B:R.161

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain B: A.95, L.96, P.97, W.98, N.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.96, B:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metlagel, Z. et al., Structural basis of ATG3 recognition by the autophagic ubiquitin-like protein ATG12. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-06

Peptides

Ubiquitin-like protein ATG12: A
Autophagy protein 5: B
Autophagy-related protein 16-1: C
Ubiquitin-like-conjugating enzyme ATG3: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

Ubiquitin-like protein ATG12

Autophagy protein 5

Autophagy-related protein 16-1

Ubiquitin-like-conjugating enzyme ATG3

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