SMTL ID : 4nie.2 (1 other biounit)

Crystal structure of the orphan nuclear receptor ROR(gamma)t ligand-binding domain in complex with small molecule ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NBH: N-(4-{[benzyl(propyl)amino]methyl}phenyl)-2-[4-(ethylsulfonyl)phenyl]acetamide(Non-covalent)

NBH.1: 20 residues within 4Å: Chain A: C.38, Q.39, L.40, L.45, W.70, C.73, A.74, H.76, L.77, L.115, R.117, M.118, R.120, A.121, F.130, F.131, F.141, L.144, I.153, Y.255 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.40, A:W.70, A:H.76, A:L.77, A:L.77, A:L.115, A:R.117, A:A.121, A:F.141, A:F.141, A:L.144, A:I.153 Hydrogen bonds: A:F.130 Water bridges: A:E.132 pi-Stacking: A:F.131, A:H.232

1 x DMX: 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE(Non-covalent)

DMX.2: 6 residues within 4Å: Chain A: W.67, L.242, H.243, P.244, I.245, V.246 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.67 Hydrogen bonds: A:I.245, A:V.246 Salt bridges: A:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T. et al., Discovery of Tertiary Amine and Indole Derivatives as Potent ROR gamma t Inverse Agonists. Acs Med.Chem.Lett. (2014)

Release Date

2013-12-11

Peptides

Nuclear receptor ROR-gamma: A
Peptide from Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Nuclear receptor ROR-gamma

Peptide from Nuclear receptor coactivator 2

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