SMTL ID : 4noe.1

Crystal structure of DdrB bound to 30b ssDNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-10-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain B: E.142 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.142, H2O.7, H2O.7, H2O.8 CA.2: 1 residues within 4Å: Chain D: E.142 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:E.142, H2O.13, H2O.13, H2O.13, H2O.14 CA.3: 1 residues within 4Å: Chain H: E.142 4 PLIP interactions: 1 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.142, H2O.28, H2O.28, H2O.29 CA.4: 1 residues within 4Å: Chain J: E.142 5 PLIP interactions: 1 interactions with chain J, 4 Ligand-Water interactions Metal complexes: J:E.142, H2O.34, H2O.34, H2O.34, H2O.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugiman-Marangos, S.N. et al., Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2015-05-20

Peptides

Single-stranded DNA-binding protein DdrB: ABCDEGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

G
A

H
B

I
C

J
D

K
E

Single-stranded DNA-binding protein DdrB

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