SMTL ID : 4nwk.1

Crystal structure of hepatis c virus protease (ns3) complexed with bms-605339 aka n-(tert-butoxycarbonyl)-3-me thyl-l-valyl-(4r)-n-((1r,2s)-1-((cyclopropylsulfonyl)carba moyl)-2-vinylcyclopropyl)-4-((6-methoxy-1-isoquinolinyl)ox y)-l-prolinamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x 2R8: N-(tert-butoxycarbonyl)-3-methyl-L-valyl-(4R)-N-{(1R,2S)-1-[(cyclopropylsulfonyl)carbamoyl]-2-ethenylcyclopropyl}-4-[(6-methoxyisoquinolin-1-yl)oxy]-L-prolinamide(Non-covalent)

2R8.1: 21 residues within 4Å: Chain A: Q.56, T.57, F.58, H.72, G.73, D.94, D.96, I.147, L.150, K.151, G.152, S.153, S.154, F.169, R.170, A.171, A.172, D.183 Ligands: GOL.5, GOL.9, GOL.10 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Q.56, A:F.58, A:D.96, A:I.147, A:L.150, A:K.151, A:F.169 Hydrogen bonds: A:H.72, A:G.152, A:S.153, A:S.154, A:S.154, A:R.170, A:A.172, A:A.172 Water bridges: A:R.170, A:R.170

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.112, T.113, C.114, C.160, H.164 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.112, A:C.114, A:C.160

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.132, R.134 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.134 Salt bridges: A:R.132, A:R.134

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: S.81, V.86, W.100, Q.101, A.102, P.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.101 Water bridges: A:Q.104 GOL.5: 5 residues within 4Å: Chain A: Q.56, T.57, G.152 Ligands: 2R8.1, GOL.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.57 GOL.6: 3 residues within 4Å: Chain A: G.75, T.76, R.77 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.76, A:T.76, A:R.77, A:R.77, A:R.77 Water bridges: A:Q.56, A:Y.71 GOL.7: 1 residues within 4Å: Chain A: T.37 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.36, A:T.37, A:T.37 GOL.8: 5 residues within 4Å: Chain A: L.15, G.17, D.18, T.19, A.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:S.16 GOL.9: 1 residues within 4Å: Ligands: 2R8.1 No protein-ligand interaction detected (PLIP) GOL.10: 4 residues within 4Å: Chain A: Q.56, K.151 Ligands: 2R8.1, GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.151, A:K.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scola, P.M. et al., Discovery and Early Clinical Evaluation of BMS-605339, a Potent and Orally Efficacious Tripeptidic Acylsulfonamide NS3 Protease Inhibitor for the Treatment of Hepatitis C Virus Infection. J.Med.Chem. (2014)

Release Date

2014-03-26

Peptides

HCV NS3 1a Protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HCV NS3 1a Protease

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