SMTL ID : 4nx0.2 (3 other biounits)

Crystal structure of Abp-WT, a GH27-b-L-arabinopyranosidase from Geobacillus stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-tetramer

Ligands

17 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.161, P.232, D.254, D.255 Ligands: GOL.2 Ligand excluded by PLIP GOL.2: 11 residues within 4Å: Chain A: W.32, D.66, Y.79, H.126, W.161, K.195, D.197, R.251, D.255, M.287 Ligands: GOL.1 Ligand excluded by PLIP GOL.3: 2 residues within 4Å: Chain A: H.117, R.224 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: V.277, G.278, L.279, R.325, Y.358 Ligand excluded by PLIP GOL.5: 4 residues within 4Å: Chain A: T.40, D.42, E.43, R.296 Ligand excluded by PLIP GOL.6: 3 residues within 4Å: Chain A: K.217, R.221 Ligands: SO4.12 Ligand excluded by PLIP GOL.18: 11 residues within 4Å: Chain B: W.32, D.66, Y.79, H.126, W.161, K.195, D.197, R.251, D.255, M.287 Ligands: GOL.21 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: T.207, H.208, T.209, E.210, E.211 Ligand excluded by PLIP GOL.20: 3 residues within 4Å: Chain B: E.261, Y.264, D.265 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain B: W.161, P.232, D.254, D.255 Ligands: GOL.18 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain C: W.161, P.232, D.254, D.255 Ligands: GOL.35 Ligand excluded by PLIP GOL.34: 3 residues within 4Å: Chain C: R.259, W.260, E.261 Ligand excluded by PLIP GOL.35: 11 residues within 4Å: Chain C: W.32, D.66, Y.79, H.126, W.161, K.195, D.197, R.251, D.255, M.287 Ligands: GOL.33 Ligand excluded by PLIP GOL.36: 1 residues within 4Å: Chain C: R.221 Ligand excluded by PLIP GOL.46: 11 residues within 4Å: Chain D: W.32, D.66, Y.79, H.126, W.161, K.195, D.197, R.251, D.255, M.287 Ligands: GOL.47 Ligand excluded by PLIP GOL.47: 5 residues within 4Å: Chain D: W.161, P.232, D.254, D.255 Ligands: GOL.46 Ligand excluded by PLIP GOL.48: 7 residues within 4Å: Chain D: H.170, R.171, T.207, H.208, T.209, E.210, E.211 Ligand excluded by PLIP

40 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain A: R.365, E.366, N.367, D.368 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: R.150 Chain C: P.84 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: E.333, R.335, D.336 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: H.17, W.21 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: K.53, Y.54 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain A: Q.176, K.217, R.221 Ligands: GOL.6, SO4.14 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain A: T.310, K.311 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain A: K.172, E.173, G.174, A.175, Q.176, A.177 Ligands: SO4.12 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: G.206, T.207, P.236, H.239 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain A: R.411, K.416 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain B: H.117, R.224 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain B: R.392, P.432 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: H.17, W.21, P.225 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain B: K.172, E.173, G.174, A.175, Q.176, A.177 Ligands: SO4.26 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain B: Q.176, K.217, R.221 Ligands: SO4.25 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain B: T.310, K.311 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain A: T.209, H.239, L.242 Chain B: Y.271, K.272 Ligand excluded by PLIP SO4.29: 5 residues within 4Å: Chain A: Y.271, K.272 Chain B: T.209, H.239, L.242 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain B: G.206, T.207, P.236, H.239 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain B: G.278, L.279, R.325, Y.358 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain B: K.217, R.221 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain C: Y.271, K.272 Chain D: T.209, H.239, L.242 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain C: D.418, L.419, G.420 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain C: G.206, T.207, P.236, H.239 Ligand excluded by PLIP SO4.40: 1 residues within 4Å: Chain C: R.80 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain C: E.173, G.174, A.175, Q.176, A.177 Ligand excluded by PLIP SO4.42: 2 residues within 4Å: Chain C: R.392, P.432 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain C: H.17, W.21, P.225 Ligand excluded by PLIP SO4.44: 2 residues within 4Å: Chain C: H.117, R.224 Ligand excluded by PLIP SO4.49: 2 residues within 4Å: Chain B: P.84 Chain D: R.150 Ligand excluded by PLIP SO4.50: 2 residues within 4Å: Chain D: H.117, R.224 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain D: G.206, T.207, P.236, H.239 Ligand excluded by PLIP SO4.52: 2 residues within 4Å: Chain D: K.217, R.221 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain D: T.310, K.311 Ligand excluded by PLIP SO4.54: 7 residues within 4Å: Chain D: K.172, E.173, G.174, A.175, Q.176, A.177 Ligands: SO4.56 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain D: G.278, L.279, R.325, Y.358 Ligand excluded by PLIP SO4.56: 4 residues within 4Å: Chain D: Q.176, K.217, R.221 Ligands: SO4.54 Ligand excluded by PLIP SO4.57: 2 residues within 4Å: Chain B: R.150 Chain D: P.84 Ligand excluded by PLIP SO4.58: 6 residues within 4Å: Chain C: T.209, D.238, H.239, L.242 Chain D: Y.271, K.272 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain D: R.411, K.416, D.418 Ligand excluded by PLIP

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.17: 9 residues within 4Å: Chain A: D.154, D.169, H.170, R.171, T.207, H.208, T.209, E.210, E.211 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.210 Hydrogen bonds: A:D.154, A:T.209, A:E.210, A:E.211, A:E.211 Water bridges: A:R.129, A:R.129, A:H.170, A:H.170, A:H.208 Salt bridges: A:H.170, A:R.171, A:H.208 CIT.45: 6 residues within 4Å: Chain C: H.170, T.207, H.208, T.209, E.210, E.211 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.207, C:T.209, C:E.210, C:E.211, C:E.211, C:E.211 Water bridges: C:R.129, C:R.129, C:S.157, C:R.171, C:H.208 Salt bridges: C:H.170, C:R.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansky, S. et al., Structure-specificity relationships in Abp, a GH27 beta-L-arabinopyranosidase from Geobacillus stearothermophilus T6. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-12-03

Peptides

Abp, a GH27 beta-L-arabinopyranosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Abp, a GH27 beta-L-arabinopyranosidase

Related Entries With Identical Sequence