SMTL ID : 4nzd.1 (3 other biounits)

Interleukin 21 receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 6 residues within 4Å: Chain A: A.52, H.53, N.54, H.57, T.59 Ligands: MAN.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.52 Hydrogen bonds: A:T.59

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 6 residues within 4Å: Chain A: R.182, T.194, W.195 Ligands: NAG-NAG-BMA-MAN-FUC.1, NAG-NAG-BMA-MAN-FUC.1, CL.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.182, A:R.182, A:T.194, A:T.194, A:W.195, A:W.195

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: Y.123, Y.137, D.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.137, A:Y.137 NA.4: 1 residues within 4Å: Chain A: G.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.193 NA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: P.185 Ligands: MAN.2 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: D.160 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: S.87, Q.88 Ligand excluded by PLIP

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.10: 5 residues within 4Å: Chain A: K.100, P.101, A.102, P.103, E.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.100 Salt bridges: A:K.100 TLA.11: 3 residues within 4Å: Chain A: D.9, T.13, I.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.13 Water bridges: A:T.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamming, O.T. et al., Interleukin 21 receptor structure and function. To be Published

Release Date

2014-12-17

Peptides

Interleukin-21 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-21 receptor

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