SMTL ID : 4nzd.3 (3 other biounits)

Interleukin 21 receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 5 residues within 4Å: Chain A: N.54, H.57, T.59 Ligands: MAN.2, EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.59, A:T.59 Water bridges: A:N.54

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 5 residues within 4Å: Chain A: R.182, T.194, W.195 Ligands: NAG-NAG-BMA-MAN-FUC.1, CL.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.182, A:R.182, A:T.194, A:T.194, A:W.195, A:W.195 Water bridges: A:R.154

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.84 NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Ligands: MAN.2 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 1 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-FUC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamming, O.T. et al., Interleukin 21 receptor structure and function. To be Published

Release Date

2014-12-17

Peptides

Interleukin-21 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Interleukin-21 receptor

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